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Report for CCDS31419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31419.1 Public Homo sapiens 11 PPFIBP2 24 110 108 CCDS HistoryNCBI Gene:8495Re-query CCDS DB by CCDS ID:31419.1Re-query CCDS DB by GeneID:8495See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31419.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299492.9 ENSP00000299492.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299492.9Link to Ensembl Protein Viewer:ENSP00000299492.4Re-query CCDS DB by Nucleotide ID:ENST00000299492Re-query CCDS DB by Protein ID:ENSP00000299492
Original member Current member NCBI NM_001351862.2 NP_001338791.2 Accepted alive Link to Nucleotide Sequence:NM_001351862.2Link to Protein Sequence:NP_001338791.2Re-query CCDS DB by Nucleotide ID:NM_001351862Re-query CCDS DB by Protein ID:NP_001338791Link to BLAST:NP_001338791.2
Original member Current member NCBI NM_003621.5 NP_003612.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003621.5Link to Protein Sequence:NP_003612.3Re-query CCDS DB by Nucleotide ID:NM_003621Re-query CCDS DB by Protein ID:NP_003612Link to BLAST:NP_003612.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338791.2 876 Q8ND30-1 876 100% 0 0
NP_003612.3 876 Q8ND30-1 876 100% 0 0

Chromosomal Locations for CCDS 31419.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 7549476 7549539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7565553 7565767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7593132 7593224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7597560 7597673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7610291 7610422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7620935 7621027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7625777 7625891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7628285 7628346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7629459 7629534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7630925 7631028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7632867 7632934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7634495 7634552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7635552 7635593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7639732 7639870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7641479 7641620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7642298 7642426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7648387 7648537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7648800 7648911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7649147 7649235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7649532 7649654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7650840 7650965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7651656 7651844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7653024 7653218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2631 nt):
ATGGCTTCTGATGCTAGTCATGCGCTGGAAGCTGCCCTGGAGCAAATGGACGGGATCATTGCAGGCACTA
AAACAGGTGCAGATCTTAGTGATGGTACTTGTGAGCCTGGACTGGCTTCCCCGGCCTCCTACATGAACCC
CTTCCCGGTGCTCCATCTCATCGAGGACTTGAGGCTGGCCTTGGAGATGCTGGAGCTTCCTCAGGAGAGA
GCAGCCCTCCTGAGCCAGATCCCTGGCCCAACAGCTGCCTACATAAAGGAATGGTTTGAAGAGAGCTTGT
CCCAGGTAAACCACCACAGTGCTGCTAGTAATGAAACCTACCAGGAACGCTTGGCACGTCTAGAAGGGGA
TAAGGAGTCCCTCATATTGCAGGTGAGTGTCCTCACAGACCAAGTAGAAGCCCAGGGAGAAAAGATTCGA
GACCTGGAAGTGTGTCTGGAAGGACACCAGGTGAAACTCAATGCTGCTGAAGAGATGCTTCAACAGGAGC
TGCTAAGCCGCACATCTCTTGAGACCCAGAAGCTCGATCTGATGACTGAAGTGTCTGAGCTGAAGCTCAA
GCTGGTTGGCATGGAGAAGGAGCAGAGAGAGCAGGAGGAGAAGCAGAGAAAAGCAGAGGAGTTACTGCAA
GAGCTCAGGCACCTCAAAATCAAAGTGGAAGAGTTGGAAAATGAAAGGAATCAGTATGAATGGAAGCTAA
AGGCCACTAAGGCTGAAGTCGCCCAGCTGCAAGAACAGGTGGCCCTGAAAGATGCAGAAATTGAGCGTCT
GCACAGCCAGCTCTCCCGGACAGCAGCTCTCCACAGTGAGAGTCACACAGAGAGAGACCAAGAAATTCAA
CGTCTGAAAATGGGGATGGAAACTTTGCTGCTTGCCAATGAAGATAAGGACCGTCGGATAGAGGAGCTTA
CGGGGCTGTTAAACCAGTACCGGAAGGTAAAGGAGATTGTGATGGTCACTCAAGGGCCTTCGGAGAGAAC
TCTCTCAATCAATGAAGAAGAACCGGAGGGAGGTTTCAGCAAGTGGAACGCTACAAATAAGGACCCTGAA
GAATTATTTAAACAAGAGATGCCTCCAAGATGTAGCTCTCCTACAGTGGGGCCACCTCCATTGCCACAGA
AATCACTGGAAACCAGGGCTCAGAAAAAGCTCTCTTGTAGTCTAGAAGACTTGAGAAGTGAATCTGTGGA
TAAGTGTATGGATGGGAACCAGCCCTTCCCGGTGTTAGAACCCAAGGACAGCCCTTTCTTGGCGGAGCAC
AAATATCCCACTTTACCTGGGAAGCTTTCAGGAGCCACGCCCAATGGAGAGGCTGCCAAATCTCCTCCCA
CCATCTGCCAGCCTGACGCCACGGGGAGCAGCCTGCTGAGGCTGAGAGACACAGAAAGTGGCTGGGACGA
CACTGCTGTGGTCAATGACCTCTCATCCACATCATCGGGCACTGAATCAGGTCCTCAGTCTCCTCTGACA
CCAGATGGTAAACGGAATCCCAAAGGCATTAAGAAGTTCTGGGGAAAAATCCGAAGAACTCAGTCAGGAA
ATTTCTACACTGACACGCTGGGGATGGCAGAGTTTCGACGAGGTGGGCTCCGGGCAACCGCAGGGCCAAG
ACTCTCTAGGACCAGGGACTCCAAGGGACAGAAAAGTGACGCCAATGCCCCCTTTGCCCAGTGGAGCACA
GAGCGTGTGTGTGCATGGCTGGAGGACTTTGGCCTGGCTCAGTATGTGATCTTTGCCAGGCAGTGGGTAT
CTTCTGGCCACACCTTATTGACAGCCACCCCTCAGGACATGGAAAAGGAGCTAGGAATTAAGCACCCACT
CCACAGGAAGAAGCTTGTTTTAGCAGTGAAAGCCATCAACACCAAACAGGAGGAGAAGTCTGCACTGCTA
GACCACATTTGGGTGACAAGGTGGCTTGATGATATTGGCTTACCCCAGTACAAAGACCAGTTTCATGAAT
CTAGAGTTGACAGACGAATGCTGCAATACCTAACTGTGAACGATTTACTCTTCTTAAAAGTCACCAGCCA
ACTACATCATCTCAGCATCAAATGTGCCATTCACGTGCTGCATGTCAACAAGTTCAACCCCCACTGCCTG
CACCGGCGGCCAGCTGATGAGAGTAACCTTTCTCCTTCAGAAGTTGTACAGTGGTCCAACCACAGGGTGA
TGGAGTGGTTACGATCTGTGGACCTGGCAGAGTATGCACCCAATCTTCGAGGGAGTGGAGTCCATGGAGG
CCTCATTATCCTGGAGCCACGCTTCACTGGGGACACCCTGGCTATGCTTCTCAACATCCCCCCACAAAAG
ACGCTCCTCAGGCGCCACCTGACCACCAAGTTCAATGCCTTGATTGGTCCGGAGGCTGAACAGGAGAAGC
GAGAGAAAATGGCCTCACCAGCTTACACACCACTGACCACCACAGCCAAAGTCCGGCCAAGGAAACTAGG
ATTTTCACACTTCGGAAACATAAGAAAAAAGAAGTTCGATGAATCGACGGACTACATTTGCCCAATGGAG
CCCAGTGACGGTGTCAGTGATAGTCACAGGGTCTACAGTGGCTACCGGGGCCTCAGCCCCCTTGATGCCC
CTGAACTGGATGGGCTGGACCAGGTGGGACAGATTAGCTGA

Translation (876 aa):
MASDASHALEAALEQMDGIIAGTKTGADLSDGTCEPGLASPASYMNPFPVLHLIEDLRLALEMLELPQER
AALLSQIPGPTAAYIKEWFEESLSQVNHHSAASNETYQERLARLEGDKESLILQVSVLTDQVEAQGEKIR
DLEVCLEGHQVKLNAAEEMLQQELLSRTSLETQKLDLMTEVSELKLKLVGMEKEQREQEEKQRKAEELLQ
ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSRTAALHSESHTERDQEIQ
RLKMGMETLLLANEDKDRRIEELTGLLNQYRKVKEIVMVTQGPSERTLSINEEEPEGGFSKWNATNKDPE
ELFKQEMPPRCSSPTVGPPPLPQKSLETRAQKKLSCSLEDLRSESVDKCMDGNQPFPVLEPKDSPFLAEH
KYPTLPGKLSGATPNGEAAKSPPTICQPDATGSSLLRLRDTESGWDDTAVVNDLSSTSSGTESGPQSPLT
PDGKRNPKGIKKFWGKIRRTQSGNFYTDTLGMAEFRRGGLRATAGPRLSRTRDSKGQKSDANAPFAQWST
ERVCAWLEDFGLAQYVIFARQWVSSGHTLLTATPQDMEKELGIKHPLHRKKLVLAVKAINTKQEEKSALL
DHIWVTRWLDDIGLPQYKDQFHESRVDRRMLQYLTVNDLLFLKVTSQLHHLSIKCAIHVLHVNKFNPHCL
HRRPADESNLSPSEVVQWSNHRVMEWLRSVDLAEYAPNLRGSGVHGGLIILEPRFTGDTLAMLLNIPPQK
TLLRRHLTTKFNALIGPEAEQEKREKMASPAYTPLTTTAKVRPRKLGFSHFGNIRKKKFDESTDYICPME
PSDGVSDSHRVYSGYRGLSPLDAPELDGLDQVGQIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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