NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31424.1 Public Homo sapiens 11 TMEM41B 24 110 108 CCDS HistoryNCBI Gene:440026Re-query CCDS DB by CCDS ID:31424.1Re-query CCDS DB by GeneID:440026See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31424.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299596.8 ENSP00000299596.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000299596.8Link to Ensembl Protein Viewer:ENSP00000299596.4Re-query CCDS DB by Nucleotide ID:ENST00000299596Re-query CCDS DB by Protein ID:ENSP00000299596
Original member Current member EBI ENST00000528080.6 ENSP00000433126.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000528080.6Link to Ensembl Protein Viewer:ENSP00000433126.1Re-query CCDS DB by Nucleotide ID:ENST00000528080Re-query CCDS DB by Protein ID:ENSP00000433126
Original member Current member EBI ENST00000611268.4 ENSP00000480141.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611268.4Link to Ensembl Protein Viewer:ENSP00000480141.1Re-query CCDS DB by Nucleotide ID:ENST00000611268Re-query CCDS DB by Protein ID:ENSP00000480141
Original member Current member NCBI NM_015012.4 NP_055827.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015012.4Link to Protein Sequence:NP_055827.1Re-query CCDS DB by Nucleotide ID:NM_015012Re-query CCDS DB by Protein ID:NP_055827Link to BLAST:NP_055827.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055827.1 291 Q5BJD5-1 291 100% 0 0

Chromosomal Locations for CCDS 31424.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 9283424 9283593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9286455 9286593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9287702 9287806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9288442 9288535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9295259 9295387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9299584 9299701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9314321 9314441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGCGAAAGGCAGAGTCGCCGAACGATCGCAGTTGGGCGCTCACCACACGACCCCCGTGGGGGACGGGG
CAGCGGGGACGCGGGGTCTCGCGGCGCCTGGCAGCAGAGACCACCAGAAGGAAAAATCCTGGGTAGAAGC
TGGATCAGCAAGAATGTCACTCCTTATATTGGTGTCCATTTTCTTATCTGCAGCTTTTGTTATGTTTTTG
GTATATAAAAATTTTCCTCAGCTTAGTGAAGAAGAAAGAGTGAATATGAAGGTTCCCAGAGATATGGATG
ATGCCAAGGCTCTAGGAAAAGTTTTATCCAAATACAAGGACACCTTTTATGTTCAAGTACTTGTAGCTTA
TTTTGCTACATATATTTTCTTGCAAACATTTGCTATTCCAGGCTCTATATTTCTCAGTATACTCTCAGGG
TTTCTTTATCCCTTTCCACTAGCCTTATTTCTTGTTTGTTTGTGTTCTGGACTTGGTGCCTCTTTCTGTT
ATATGCTTTCCTATTTAGTTGGGAGACCAGTTGTATACAAATACCTAACAGAGAAAGCAGTAAAATGGTC
ACAGCAGGTTGAACGTCATAGAGAACATCTCATTAACTACATTATATTTTTGAGAATAACACCATTTCTG
CCTAATTGGTTTATTAATATCACATCTCCTGTGATAAACGTGCCATTGAAAGTTTTTTTTATTGGTACTT
TTCTAGGTGTCGCACCTCCTTCTTTTGTAGCCATTAAGGCAGGAACAACACTGTATCAACTTACAACAGC
AGGAGAAGCTGTTTCCTGGAACTCAATATTTATTCTGATGATCTTGGCTGTTCTTTCTATTCTGCCAGCC
ATCTTCCAAAAAAAACTAAAGCAGAAATTTGAGTAA

Translation (291 aa):
MAKGRVAERSQLGAHHTTPVGDGAAGTRGLAAPGSRDHQKEKSWVEAGSARMSLLILVSIFLSAAFVMFL
VYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSG
FLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFL
PNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSIFILMILAVLSILPA
IFQKKLKQKFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH