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Report for CCDS31453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31453.1 Public Homo sapiens 11 CAPRIN1 24 110 108 CCDS HistoryNCBI Gene:4076Re-query CCDS DB by CCDS ID:31453.1Re-query CCDS DB by GeneID:4076See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341394.9 ENSP00000340329.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341394.9Link to Ensembl Protein Viewer:ENSP00000340329.4Re-query CCDS DB by Nucleotide ID:ENST00000341394Re-query CCDS DB by Protein ID:ENSP00000340329
Original member Current member EBI ENST00000532820.5 ENSP00000434150.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532820.5Link to Ensembl Protein Viewer:ENSP00000434150.1Re-query CCDS DB by Nucleotide ID:ENST00000532820Re-query CCDS DB by Protein ID:ENSP00000434150
Original member Current member NCBI NM_005898.5 NP_005889.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005898.5Link to Protein Sequence:NP_005889.3Re-query CCDS DB by Nucleotide ID:NM_005898Re-query CCDS DB by Protein ID:NP_005889Link to BLAST:NP_005889.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005889.3 709 Q14444-1 709 100% 0 0

Chromosomal Locations for CCDS 31453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 34052421 34052636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34071726 34071788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34071901 34071987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34076236 34076474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34076560 34076642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34079628 34079765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34082825 34082877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34082955 34083041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34086064 34086219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34086305 34086413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34089395 34089456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34090179 34090289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34090529 34090678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34091906 34092056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34096479 34096673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34097196 34097296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34097698 34097761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34099303 34099367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGCCCTCGGCCACCAGCCACAGCGGGAGCGGCAGCAAGTCGTCCGGACCGCCACCGCCGTCGGGTTCCT
CCGGGAGTGAGGCGGCCGCGGGAGCCGGGGCCGCCGCGCCGGCTTCTCAGCACCCCGCAACCGGCACCGG
CGCTGTCCAGACCGAGGCCATGAAGCAGATTCTCGGGGTGATCGACAAGAAACTTCGGAACCTGGAGAAG
AAAAAGGGTAAGCTTGATGATTACCAGGAACGAATGAACAAAGGGGAAAGGCTTAATCAAGATCAGCTGG
ATGCCGTTTCTAAGTACCAGGAAGTCACAAATAATTTGGAGTTTGCAAAAGAATTACAGAGGAGTTTCAT
GGCACTAAGTCAAGATATTCAGAAAACAATAAAGAAGACAGCACGTCGGGAGCAGCTTATGAGAGAAGAA
GCTGAACAGAAACGTTTAAAAACTGTACTTGAGCTACAGTATGTTTTGGACAAATTGGGAGATGATGAAG
TGCGGACTGACCTGAAACAAGGTTTGAATGGAGTGCCAATATTGTCCGAAGAGGAGTTGTCATTGTTGGA
TGAATTCTATAAGCTAGTAGACCCTGAACGGGACATGAGCTTGAGGTTGAATGAACAGTATGAACATGCC
TCCATTCACCTGTGGGACCTGCTGGAAGGGAAGGAAAAACCTGTATGTGGAACCACCTATAAAGTTCTAA
AGGAAATTGTTGAGCGTGTTTTTCAGTCAAACTACTTTGACAGCACCCACAACCACCAGAATGGGCTGTG
TGAGGAAGAAGAGGCAGCCTCAGCACCTGCAGTTGAAGACCAGGTACCTGAAGCTGAACCTGAGCCAGCA
GAAGAGTACACTGAGCAAAGTGAAGTTGAATCAACAGAGTATGTAAATAGACAGTTCATGGCAGAAACAC
AGTTCACCAGTGGTGAAAAGGAGCAGGTAGATGAGTGGACAGTTGAAACGGTTGAGGTGGTAAATTCACT
CCAGCAGCAACCTCAGGCTGCATCCCCTTCAGTACCAGAGCCCCACTCTTTGACTCCAGTGGCTCAGGCA
GATCCCCTTGTGAGAAGACAGCGAGTACAAGACCTTATGGCACAAATGCAGGGTCCCTATAATTTCATAC
AGGATTCAATGCTGGATTTTGAAAATCAGACACTTGATCCTGCCATTGTATCTGCACAGCCTATGAATCC
AACACAAAACATGGACATGCCCCAGCTGGTTTGCCCTCCAGTTCATTCTGAATCTAGACTTGCTCAGCCT
AATCAAGTTCCTGTACAACCAGAAGCGACACAGGTTCCTTTGGTATCATCCACAAGTGAGGGGTACACAG
CATCTCAACCCTTGTACCAGCCTTCTCATGCTACAGAGCAACGACCACAGAAGGAACCAATTGATCAGAT
TCAGGCAACAATCTCTTTAAATACAGACCAGACTACAGCATCATCATCCCTTCCTGCTGCGTCTCAGCCT
CAAGTATTTCAGGCTGGGACAAGCAAACCTTTACATAGCAGTGGAATCAATGTAAATGCAGCTCCATTCC
AATCCATGCAAACGGTGTTCAATATGAATGCCCCAGTTCCTCCTGTTAATGAACCAGAAACTTTAAAACA
GCAAAATCAGTACCAGGCCAGTTATAACCAGAGCTTTTCTAGTCAGCCTCACCAAGTAGAACAAACAGAG
CTTCAGCAAGAACAGCTTCAAACAGTGGTTGGCACTTACCATGGTTCCCCAGACCAGTCCCATCAAGTGA
CTGGTAACCACCAGCAGCCTCCTCAGCAGAACACTGGATTTCCACGTAGCAATCAGCCCTATTACAATAG
TCGTGGTGTGTCTCGTGGAGGCTCCCGTGGTGCTAGAGGCTTGATGAATGGATACCGGGGCCCTGCCAAT
GGATTCAGAGGAGGATATGATGGTTACCGCCCTTCATTCTCTAACACTCCAAACAGTGGTTATACACAGT
CTCAGTTCAGTGCTCCCCGGGATTACTCTGGCTATCAACGGGATGGATATCAGCAGAATTTCAAGCGAGG
CTCTGGGCAGAGTGGACCACGGGGAGCCCCACGAGGTCGTGGAGGGCCCCCAAGACCCAACAGAGGGATG
CCGCAAATGAACACTCAGCAAGTGAATTAA

Translation (709 aa):
MPSATSHSGSGSKSSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMKQILGVIDKKLRNLEK
KKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREE
AEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEHA
SIHLWDLLEGKEKPVCGTTYKVLKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPAVEDQVPEAEPEPA
EEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVETVEVVNSLQQQPQAASPSVPEPHSLTPVAQA
DPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQP
NQVPVQPEATQVPLVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQP
QVFQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSSQPHQVEQTE
LQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFPRSNQPYYNSRGVSRGGSRGARGLMNGYRGPAN
GFRGGYDGYRPSFSNTPNSGYTQSQFSAPRDYSGYQRDGYQQNFKRGSGQSGPRGAPRGRGGPPRPNRGM
PQMNTQQVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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