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Report for CCDS31484.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31484.2 Public Homo sapiens 11 NUP160 24 110 108 CCDS HistoryNCBI Gene:23279Re-query CCDS DB by CCDS ID:31484.2Re-query CCDS DB by GeneID:23279See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31484.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378460.7 ENSP00000367721.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378460.7Link to Ensembl Protein Viewer:ENSP00000367721.3Re-query CCDS DB by Nucleotide ID:ENST00000378460Re-query CCDS DB by Protein ID:ENSP00000367721
Original member Current member NCBI NM_015231.3 NP_056046.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015231.3Link to Protein Sequence:NP_056046.2Re-query CCDS DB by Nucleotide ID:NM_015231Re-query CCDS DB by Protein ID:NP_056046Link to BLAST:NP_056046.2

Chromosomal Locations for CCDS 31484.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 47779105 47779194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47780343 47780447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47783073 47783198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47784922 47785063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47786453 47786554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47788182 47788305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47788501 47788611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47791930 47791990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47792786 47792946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47797779 47797884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47797978 47798074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47798168 47798262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47798368 47798463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47801811 47801930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47803438 47803536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47804549 47804618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47806153 47806312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47807070 47807140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47808396 47808529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47812064 47812224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47812302 47812429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47812882 47813047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47813316 47813415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47815479 47815649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47815946 47816029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47818056 47818124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47819374 47819458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47821724 47821821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47822087 47822164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47835651 47835809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47836887 47837001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47837545 47837623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47839843 47840065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47840378 47840588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47847848 47847959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47848219 47848318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4209 nt):
ATGGCGGCGGCGGGAGCCCTGGAACGGAGCTTCGTGGAGCTAAGCGGAGCTGAGCGCGAAAGGCCGAGGC
ACTTTCGGGAATTCACAGTCTGCAGCATTGGGACTGCAAATGCCGTGGCTGGCGCCGTAAAATACAGTGA
AAGCGCGGGAGGCTTTTACTACGTGGAGAGTGGCAAGTTGTTCTCCGTAACCAGAAACAGGTTCATTCAT
TGGAAGACCTCTGGAGATACATTGGAGCTGATGGAGGAGTCACTGGACATAAATCTGTTGAATAATGCCA
TTCGCCTAAAATTCCAAAATTGCAGTGTTTTACCTGGAGGGGTTTATGTCTCTGAGACTCAGAATCGTGT
GATAATCTTGATGTTAACCAATCAAACAGTGCACAGGTTACTTTTACCACACCCCTCCCGGATGTATAGG
AGTGAGTTGGTAGTTGACAGTCAGATGCAGTCAATATTCACTGACATTGGAAAAGTTGATTTCACAGATC
CTTGCAACTATCAGTTAATTCCAGCAGTACCTGGAATATCTCCTAATTCCACCGCCTCTACAGCCTGGCT
CAGCAGTGATGGGGAGGCCCTGTTTGCCTTACCATGTGCTTCTGGGGGAATCTTTGTTCTTAAGCTACCT
CCTTATGACATACCTGGTATGGTGTCAGTCGTGGAACTGAAACAGAGTTCAGTAATGCAACGATTGCTTA
CAGGCTGGATGCCAACAGCTATCAGGGGTGACCAGTCGCCTTCAGATCGTCCCCTCAGTCTTGCTGTTCA
TTGTGTGGAGCATGATGCCTTCATCTTTGCTTTGTGTCAGGATCATAAACTACGAATGTGGTCTTACAAG
GAGCAAATGTGCCTAATGGTAGCTGACATGCTGGAGTATGTCCCTGTGAAGAAAGACCTTCGGCTTACTG
CTGGAACTGGACACAAATTACGGCTTGCTTATTCCCCCACCATGGGACTCTACCTGGGGATATACATGCA
TGCACCAAAACGAGGACAGTTCTGCATTTTCCAGTTGGTGAGCACTGAGAGTAATCGCTATAGTCTCGAT
CATATTTCTTCACTGTTCACTTCTCAGGAGACACTGATTGACTTTGCCTTAACTTCCACGGATATCTGGG
CCCTGTGGCATGATGCTGAGAACCAAACAGTAGTGAAATACATCAACTTTGAACATAATGTTGCAGGTCA
GTGGAATCCAGTTTTTATGCAGCCTCTGCCAGAGGAAGAGATTGTCATCAGAGATGATCAAGACCCCAGA
GAGATGTATCTGCAAAGTCTTTTTACACCAGGACAATTCACAAATGAAGCTTTATGTAAGGCTTTACAGA
TTTTCTGCCGAGGAACTGAGAGGAATTTGGATCTTTCCTGGAGTGAACTGAAGAAAGAAGTTACTTTAGC
TGTTGAAAATGAGCTTCAAGGAAGTGTAACAGAGTATGAATTCTCCCAGGAGGAGTTTCGAAATTTACAA
CAAGAATTCTGGTGCAAGTTCTATGCCTGTTGTCTTCAGTATCAAGAAGCCCTCTCTCACCCTCTTGCCC
TACATTTGAATCCACACACAAACATGGTGTGCCTGCTGAAAAAAGGGTACCTGTCTTTCCTTATTCCCTC
ATCCTTAGTGGATCATTTGTATCTCCTGCCTTATGAGAACCTTTTGACAGAAGATGAGACAACCATATCT
GATGATGTGGACATCGCTCGGGATGTCATATGTCTTATAAAATGCCTCCGGCTGATTGAAGAGTCAGTAA
CTGTGGATATGTCAGTTATAATGGAAATGAGTTGTTATAACCTACAGTCTCCGGAAAAGGCTGCAGAGCA
GATTCTGGAAGATATGATCACTATTGATGTAGAAAATGTGATGGAGGATATTTGTAGTAAACTGCAAGAG
ATTAGGAACCCAATCCATGCAATTGGACTACTTATACGGGAAATGGATTATGAAACAGAAGTGGAAATGG
AAAAGGGATTCAATCCAGCTCAGCCTTTGAATATTCGAATGAATCTTACCCAGCTCTATGGTAGTAACAC
AGCAGGGTATATTGTGTGCAGAGGGGTGCATAAAATCGCCAGTACTCGTTTCCTGATCTGCAGAGATCTT
TTGATCTTACAGCAGCTGTTAATGAGGCTTGGAGATGCTGTGATTTGGGGAACTGGTCAGCTCTTTCAAG
CTCAGCAAGACCTACTACATCGAACAGCTCCCCTACTCTTATCTTATTACCTCATTAAATGGGGAAGTGA
GTGCTTGGCAACTGATGTTCCACTTGACACACTGGAGTCTAATCTCCAACACTTATCAGTACTGGAATTA
ACAGACTCTGGTGCTTTAATGGCAAATAGGTTTGTATCTAGTCCTCAGACTATTGTGGAGTTATTCTTCC
AAGAAGTTGCAAGAAAACACATTATATCTCACCTCTTCTCTCAGCCAAAGGCACCTCTGAGCCAAACTGG
ATTGAATTGGCCTGAAATGATTACTGCAATTACCAGTTATTTATTGCAGCTTTTATGGCCTAGCAATCCT
GGTTGTCTCTTTCTAGAATGTTTGATGGGAAATTGCCAATATGTACAATTGCAGGATTATATTCAACTGC
TACATCCCTGGTGTCAAGTCAATGTTGGTTCCTGTCGATTTATGCTGGGAAGGTGTTACCTAGTTACAGG
AGAAGGACAGAAGGCTCTGGAATGTTTTTGTCAGGCAGCATCTGAAGTAGGCAAAGAGGAATTCTTGGAT
CGCTTGATTCGCTCAGAGGATGGGGAGATCGTGTCTACCCCCAGGCTGCAGTATTATGACAAGGTTTTAC
GACTACTAGATGTCATTGGTTTGCCTGAACTGGTTATTCAGTTGGCTACATCAGCCATAACTGAAGCAGG
TGATGACTGGAAAAGTCAGGCTACTCTAAGGACATGTATTTTCAAACATCATTTGGATTTGGGTCACAAT
AGCCAAGCATATGAAGCCTTAACCCAAATTCCTGATTCCAGCAGGCAATTAGATTGTTTACGGCAGTTGG
TGGTAGTTCTTTGTGAACGCTCACAGCTACAGGATCTTGTAGAGTTTCCCTATGTGAATCTGCATAATGA
GGTTGTGGGAATAATTGAGTCACGTGCTAGAGCTGTGGACCTTATGACTCACAATTACTATGAACTTCTG
TATGCCTTTCACATCTATCGCCACAATTACCGCAAGGCTGGCACAGTGATGTTTGAGTATGGAATGCGGC
TTGGCAGAGAAGTTCGAACTCTCCGGGGACTTGAGAAACAAGGCAACTGTTATCTGGCTGCTCTCAATTG
TTTACGACTTATTCGTCCAGAATATGCGTGGATTGTGCAGCCAGTGTCTGGTGCAGTGTATGATCGCCCT
GGAGCATCCCCTAAGAGGAATCATGATGGAGAATGCACAGCTGCCCCCACAAATCGACAAATTGAAATCC
TGGAACTGGAAGATCTGGAGAAAGAGTGTTCCTTGGCTCGCATCCGCCTCACTTTGGCTCAGCATGATCC
ATCAGCGGTTGCAGTTGCTGGAAGTTCATCAGCAGAGGAAATGGTCACTCTCTTGGTTCAGGCGGGCCTC
TTTGACACTGCCATATCACTCTGTCAGACTTTTAAGCTTCCCTTAACGCCAGTCTTTGAAGGGCTTGCCT
TCAAATGCATCAAATTGCAATTTGGAGGAGAGGCAGCACAAGCAGAAGCCTGGGCCTGGCTAGCAGCCAA
TCAGCTCTCATCTGTCATCACTACTAAGGAGTCTAGTGCTACAGATGAAGCATGGCGACTATTATCCACT
TACCTGGAGAGGTACAAAGTCCAGAATAACTTGTATCACCACTGTGTAATCAACAAGCTCTTGTCTCATG
GAGTGCCTCTGCCTAATTGGCTTATAAACAGTTACAAGAAGGTTGATGCTGCTGAATTGCTTCGTTTATA
CTTAAACTATGACCTTTTAGAAGAAGCTGTGGATTTGGTGTCAGAATATGTGGATGCTGTATTGGGAAAA
GGACATCAATACTTCGGAATTGAGTTTCCACTGTCCGCAACAGCCCCAATGGTGTGGCTTCCATACTCCT
CTATTGATCAGCTTCTCCAAGCTCTGGGAGAGAACAGTGCCAACAGTCACAACATCGCACTGTCCCAGAA
AATACTTGACAAATTGGAGGACTACCAGCAAAAAGTTGATAAGGCAACACGGGATTTATTATATCGTCGG
ACCTTGTGA

Translation (1402 aa):
MAAAGALERSFVELSGAERERPRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIH
WKTSGDTLELMEESLDINLLNNAIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYR
SELVVDSQMQSIFTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFVLKLP
PYDIPGMVSVVELKQSSVMQRLLTGWMPTAIRGDQSPSDRPLSLAVHCVEHDAFIFALCQDHKLRMWSYK
EQMCLMVADMLEYVPVKKDLRLTAGTGHKLRLAYSPTMGLYLGIYMHAPKRGQFCIFQLVSTESNRYSLD
HISSLFTSQETLIDFALTSTDIWALWHDAENQTVVKYINFEHNVAGQWNPVFMQPLPEEEIVIRDDQDPR
EMYLQSLFTPGQFTNEALCKALQIFCRGTERNLDLSWSELKKEVTLAVENELQGSVTEYEFSQEEFRNLQ
QEFWCKFYACCLQYQEALSHPLALHLNPHTNMVCLLKKGYLSFLIPSSLVDHLYLLPYENLLTEDETTIS
DDVDIARDVICLIKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAAEQILEDMITIDVENVMEDICSKLQE
IRNPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVCRGVHKIASTRFLICRDL
LILQQLLMRLGDAVIWGTGQLFQAQQDLLHRTAPLLLSYYLIKWGSECLATDVPLDTLESNLQHLSVLEL
TDSGALMANRFVSSPQTIVELFFQEVARKHIISHLFSQPKAPLSQTGLNWPEMITAITSYLLQLLWPSNP
GCLFLECLMGNCQYVQLQDYIQLLHPWCQVNVGSCRFMLGRCYLVTGEGQKALECFCQAASEVGKEEFLD
RLIRSEDGEIVSTPRLQYYDKVLRLLDVIGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHN
SQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELL
YAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLIRPEYAWIVQPVSGAVYDRP
GASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHDPSAVAVAGSSSAEEMVTLLVQAGL
FDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQAEAWAWLAANQLSSVITTKESSATDEAWRLLST
YLERYKVQNNLYHHCVINKLLSHGVPLPNWLINSYKKVDAAELLRLYLNYDLLEEAVDLVSEYVDAVLGK
GHQYFGIEFPLSATAPMVWLPYSSIDQLLQALGENSANSHNIALSQKILDKLEDYQQKVDKATRDLLYRR
TL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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