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Report for CCDS31634.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31634.1 Public Homo sapiens 11 ATG16L2 24 110 108 CCDS HistoryNCBI Gene:89849Re-query CCDS DB by CCDS ID:31634.1Re-query CCDS DB by GeneID:89849See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31634.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321297.10 ENSP00000326340.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321297.10Link to Ensembl Protein Viewer:ENSP00000326340.5Re-query CCDS DB by Nucleotide ID:ENST00000321297Re-query CCDS DB by Protein ID:ENSP00000326340
Original member Current member NCBI NM_033388.2 NP_203746.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033388.2Link to Protein Sequence:NP_203746.1Re-query CCDS DB by Nucleotide ID:NM_033388Re-query CCDS DB by Protein ID:NP_203746Link to BLAST:NP_203746.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_203746.1 619 Q8NAA4-1 619 100% 0 0

Chromosomal Locations for CCDS 31634.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72814446 72814563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72816728 72816827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72817756 72817855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72821668 72821741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72822044 72822295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72822478 72822543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72822848 72822961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72824060 72824122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72824734 72824842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72825302 72825407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72826173 72826243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72826518 72826589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72826703 72826823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72827188 72827293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72828359 72828508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72828729 72828776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72828883 72828984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72829303 72829390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGGCGGGGCCGGGCGTCCCCGGTGCCCCCGCAGCGCGCTGGAAACGCCACATCGTGCGGCAGCTGCGGC
TTCGGGACCGTACGCAAAAGGCGCTTTTCCTGGAGCTGGTGCCGGCCTATAACCATCTCTTAGAGAAGGC
TGAGCTGCTGGACAAGTTCTCAAAGAAGCTGCAGCCGGAGCCAAACAGTGTCACTCCCACCACCCACCAG
GGCCCCTGGGAGGAGTCAGAGCTTGACTCAGACCAAGTCCCATCACTGGTCGCACTGAGGGTGAAGTGGC
AGGAGGAGGAGGAGGGGCTCCGGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGGAGAAGGGCGCGGC
CCTGGGCACGCTGGAGTCGGAGCTGCAGCAGAGGCAAAGCAGGCTGGCAGCCCTGGAGGCCCGCGTGGCG
CAGCTGCGAGAGGCGCGGGCGCAGCAGGCCCAGCAGGTGGAGGAGTGGCGGGCGCAGAATGCGGTGCAGC
GGGCAGCCTACGAGGCGCTGCGCGCGCACGTCGGGCTCCGGGAGGCGGCACTGCGCAGGCTCCAGGAAGA
GGCGCGCGACCTGCTGGAGAGGCTCGTGCAGCGCAAGGCGCGCGCCGCGGCCGAGCGCAACCTGCGCAAC
GAGCGCCGGGAGCGGGCCAAGCAGGCGCGGGTGTCCCAGGAGCTGAAGAAGGCTGCCAAGCGGACCGTGA
GCATCAGCGAGGGCCCGGACACCCTAGGCGATGGGATGAGGGAGAGAAGGGAGACTCTGGCTCTGGCCCC
TGAGCCAGAGCCCCTGGAGAAGGAAGCTTGTGAGAAGTGGAAGAGGCCCTTCAGGTCTGCCTCAGCCACC
TCCCTGACGCTGTCCCACTGTGTGGATGTGGTGAAGGGGCTTCTGGATTTTAAGAAGAGGAGAGGTCACT
CAATTGGGGGAGCCCCTGAGCAGCGATACCAGATCATCCCTGTGTGTGTGGCTGCCCGACTTCCTACCCG
GGCTCAGGATGTGCTGGATGCCCACCTCTCTGAGGTCAATGCTGTTCGTTTTGGCCCCAACAGCAGCCTC
CTGGCCACTGGAGGGGCTGACCGCCTGATCCACCTCTGGAATGTTGTGGGAAGTCGCCTGGAGGCCAACC
AGACCCTGGAGGGAGCTGGTGGCAGCATCACCAGTGTGGACTTTGACCCCTCGGGCTACCAGGTTTTAGC
AGCAACTTACAACCAGGCTGCCCAGCTCTGGAAGGTGGGGGAGGCACAGTCCAAGGAGACACTGTCTGGA
CACAAGGATAAGGTGACAGCTGCCAAATTCAAGCTAACGAGGCACCAGGCAGTGACTGGGAGCCGCGACC
GGACAGTGAAGGAGTGGGACCTCGGCCGTGCCTATTGCTCCAGGACCATCAATGTCCTTTCCTACTGTAA
TGACGTGGTGTGTGGGGACCATATCATCATTAGTGGCCACAATGACCAGAAGATCCGGTTCTGGGACAGC
AGGGGGCCCCACTGCACCCAGGTCATCCCTGTGCAGGGCCGGGTCACCTCCCTGAGCCTCAGCCACGACC
AACTGCACCTGCTCAGCTGTTCCCGAGACAACACACTCAAGGTCATCGACCTGCGTGTCAGCAACATCCG
CCAGGTGTTCAGGGCCGATGGCTTCAAGTGTGGTTCTGACTGGACCAAAGCTGTGTTCAGCCCGGACAGA
AGCTATGCACTGGCAGGCTCCTGTGATGGGGCCCTTTACATCTGGGATGTGGACACCGGGAAACTGGAGA
GCAGACTACAGGGACCCCATTGCGCTGCCGTCAACGCCGTGGCCTGGTGCTACTCCGGGAGCCACATGGT
GAGCGTGGACCAGGGCAGGAAGGTTGTGCTCTGGCAGTAG

Translation (619 aa):
MAGPGVPGAPAARWKRHIVRQLRLRDRTQKALFLELVPAYNHLLEKAELLDKFSKKLQPEPNSVTPTTHQ
GPWEESELDSDQVPSLVALRVKWQEEEEGLRLVCGEMAYQVVEKGAALGTLESELQQRQSRLAALEARVA
QLREARAQQAQQVEEWRAQNAVQRAAYEALRAHVGLREAALRRLQEEARDLLERLVQRKARAAAERNLRN
ERRERAKQARVSQELKKAAKRTVSISEGPDTLGDGMRERRETLALAPEPEPLEKEACEKWKRPFRSASAT
SLTLSHCVDVVKGLLDFKKRRGHSIGGAPEQRYQIIPVCVAARLPTRAQDVLDAHLSEVNAVRFGPNSSL
LATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSVDFDPSGYQVLAATYNQAAQLWKVGEAQSKETLSG
HKDKVTAAKFKLTRHQAVTGSRDRTVKEWDLGRAYCSRTINVLSYCNDVVCGDHIIISGHNDQKIRFWDS
RGPHCTQVIPVQGRVTSLSLSHDQLHLLSCSRDNTLKVIDLRVSNIRQVFRADGFKCGSDWTKAVFSPDR
SYALAGSCDGALYIWDVDTGKLESRLQGPHCAAVNAVAWCYSGSHMVSVDQGRKVVLWQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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