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Report for CCDS31854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31854.1 Public Homo sapiens 12 HMGA2 24 110 108 CCDS HistoryNCBI Gene:8091Re-query CCDS DB by CCDS ID:31854.1Re-query CCDS DB by GeneID:8091See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31854.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354636.7 ENSP00000346658.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354636.7Link to Ensembl Protein Viewer:ENSP00000346658.3Re-query CCDS DB by Nucleotide ID:ENST00000354636Re-query CCDS DB by Protein ID:ENSP00000346658
Original member Current member NCBI NM_003484.1 NP_003475.1 Accepted alive Link to Nucleotide Sequence:NM_003484.1Link to Protein Sequence:NP_003475.1Re-query CCDS DB by Nucleotide ID:NM_003484Re-query CCDS DB by Protein ID:NP_003475Link to BLAST:NP_003475.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003475.1 106 P52926-2 106 100% 0 0

Chromosomal Locations for CCDS 31854.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 65825271 65825381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65828001 65828087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65838519 65838569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65915059 65915130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGAGCGCACGCGGTGAGGGCGCGGGGCAGCCGTCCACTTCAGCCCAGGGACAACCTGCCGCCCCAGCGC
CTCAGAAGAGAGGACGCGGCCGCCCCAGGAAGCAGCAGCAAGAACCAACCGGTGAGCCCTCTCCTAAGAG
ACCCAGGGGAAGACCCAAAGGCAGCAAAAACAAGAGTCCCTCTAAAGCAGCTCAAAAGAAAGCAGAAGCC
ACTGGAGAAAAACGGCCAAGAGGCAGACCTAGGAAATGGGACAATCTACTACCAAGAACCAGCTCCAAGA
AGAAAACATCTCTGGGAAACAGTACCAAAAGGAGTCACTGA

Translation (106 aa):
MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEA
TGEKRPRGRPRKWDNLLPRTSSKKKTSLGNSTKRSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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