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Report for CCDS31962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31962.1 Public Homo sapiens 13 NHLRC3 24 110 108 CCDS HistoryNCBI Gene:387921Re-query CCDS DB by CCDS ID:31962.1Re-query CCDS DB by GeneID:387921See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31962.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379599.6 ENSP00000368919.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379599.6Link to Ensembl Protein Viewer:ENSP00000368919.2Re-query CCDS DB by Nucleotide ID:ENST00000379599Re-query CCDS DB by Protein ID:ENSP00000368919
Original member Current member NCBI NM_001017370.3 NP_001017370.1 Accepted alive Link to Nucleotide Sequence:NM_001017370.3Link to Protein Sequence:NP_001017370.1Re-query CCDS DB by Nucleotide ID:NM_001017370Re-query CCDS DB by Protein ID:NP_001017370Link to BLAST:NP_001017370.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017370.1 280 Q5JS37-2 280 100% 0 0

Chromosomal Locations for CCDS 31962.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 39038640 39038723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39039136 39039288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39039564 39039711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39044090 39044181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39047040 39047152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39047674 39047926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGGCGAGATTCTGGGTCTGCGTAGCCGGTGCTGGCTTCTTTCTTGCATTTTTGGTTTTGCATTCGCGTT
TTTGTGGCTCTCCAGTTTTGAGGAACTTTACTTTTGCAGTTTCCTGGAGAACTGAGAAAATTCTTTACCG
GCTGGATGTGGGTTGGCCTAAGCACCCAGAATATTTTACCGGAACAACATTTTGTGTTGCAGTTGACTCC
CTCAATGGATTGGTTTACATAGGTCAAAGAGGGGATAACATCCCAAAGATATTAGTGTTCACAGAGGATG
GATATTTCCTACGAGCCTGGAATTATACAGTTGACACACCTCATGGTATATTTGCAGCCAGTACTCTATA
TGAACAATCCGTCTGGATCACGGATGTAGGAAGTGATTTCATGATCCTTTGGCTGCATGGAGAAAATGGG
ACAGGGCCTGCTAAGTTCAACATACCTCACAGTGTTACACTTGATTCAGCTGGTCGGGTGTGGGTTGCTG
ACCGAGGAAATAAAAGAATCCAAGTATTTGATAAAGACACTGGGGAGTGGTTAGGAGCATGGAATAATTG
TTTCACAGAAGAGGGACCTTCTTCAGTCAGGTTTACTCCTGATGGGAAGTACTTGATTGTGGCCCAGCTG
AATCTTAGCAGGCTCTCAGTCGTAGCAGCACCCCCAGTGGGAAGCATTGGGGAGTGTTCTGTGATCAGCA
CAATCCAACTAGCAGATCAAGTTTTGCCACATCTCCTAGAAGTCGACAGAAAGACTGGAGCAGTCTATGT
AGCAGAAATTGGAGCAAAACAAGTACAAAAATATGTCCCTTTGAATAGCTATGTTCCTTCATTTGGTTCA
TAA

Translation (280 aa):
MARFWVCVAGAGFFLAFLVLHSRFCGSPVLRNFTFAVSWRTEKILYRLDVGWPKHPEYFTGTTFCVAVDS
LNGLVYIGQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYEQSVWITDVGSDFMILWLHGENG
TGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWLGAWNNCFTEEGPSSVRFTPDGKYLIVAQL
NLSRLSVVAAPPVGSIGECSVISTIQLADQVLPHLLEVDRKTGAVYVAEIGAKQVQKYVPLNSYVPSFGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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