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Report for CCDS32255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32255.1 Public Homo sapiens 15 FOXB1 24 110 108 CCDS HistoryNCBI Gene:27023Re-query CCDS DB by CCDS ID:32255.1Re-query CCDS DB by GeneID:27023See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32255.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396057.6 ENSP00000379369.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396057.6Link to Ensembl Protein Viewer:ENSP00000379369.4Re-query CCDS DB by Nucleotide ID:ENST00000396057Re-query CCDS DB by Protein ID:ENSP00000379369
Original member Current member NCBI NM_012182.3 NP_036314.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012182.3Link to Protein Sequence:NP_036314.2Re-query CCDS DB by Nucleotide ID:NM_012182Re-query CCDS DB by Protein ID:NP_036314Link to BLAST:NP_036314.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036314.2 325 Q99853 325 100% 0 0

Chromosomal Locations for CCDS 32255.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 60004964 60005941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGCCTCGGCCCGGCCGCAACACGTACAGCGACCAGAAGCCGCCCTACTCGTACATCTCGCTGACCGCTA
TGGCCATCCAGAGCTCTCCCGAGAAGATGCTGCCGCTGAGCGAGATCTACAAGTTCATCATGGACCGCTT
CCCCTACTACAGGGAGAACACGCAGCGCTGGCAGAACAGTCTGCGCCACAACCTCTCCTTCAACGACTGC
TTCATCAAGATCCCGCGGCGGCCGGACCAGCCAGGCAAGGGCAGCTTCTGGGCGCTGCACCCAAGCTGCG
GGGACATGTTCGAGAACGGCAGCTTCCTGCGGCGCCGCAAGCGCTTCAAGGTGCTTAAGTCCGACCACCT
GGCGCCCAGCAAGCCAGCCGACGCGGCGCAGTACCTGCAGCAGCAGGCCAAGCTGCGGCTCAGCGCGCTG
GCGGCCTCGGGCACGCACCTGCCACAGATGCCCGCCGCCGCCTACAACTTGGGCGGCGTGGCGCAGCCCT
CGGGCTTCAAGCACCCCTTCGCCATCGAGAACATCATCGCGCGGGAATACAAGATGCCTGGGGGGCTGGC
CTTCTCCGCCATGCAGCCGGTGCCCGCTGCCTACCCGCTCCCCAACCAGTTGACTACCATGGGCAGCTCG
CTGGGCACCGGCTGGCCACACGTGTATGGCTCCGCCGGCATGATCGACTCGGCCACCCCCATCTCCATGG
CGAGTGGCGACTACAGCGCCTACGGCGTGCCGTTGAAGCCGCTGTGCCACGCGGCGGGCCAAACGCTGCC
CGCCATCCCCGTGCCCATTAAGCCCACGCCGGCCGCCGTGCCCGCGCTGCCTGCGCTGCCAGCGCCCATC
CCCACCTTGCTCTCGAACTCGCCGCCCTCGCTCAGCCCCACGTCCTCGCAAACAGCCACCAGCCAAAGCA
GCCCCGCCACCCCCAGCGAAACGCTCACCAGCCCGGCCTCCGCCTTGCACTCGGTGGCGGTGCACTGA

Translation (325 aa):
MPRPGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRHNLSFNDC
FIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRKRFKVLKSDHLAPSKPADAAQYLQQQAKLRLSAL
AASGTHLPQMPAAAYNLGGVAQPSGFKHPFAIENIIAREYKMPGGLAFSAMQPVPAAYPLPNQLTTMGSS
LGTGWPHVYGSAGMIDSATPISMASGDYSAYGVPLKPLCHAAGQTLPAIPVPIKPTPAAVPALPALPAPI
PTLLSNSPPSLSPTSSQTATSQSSPATPSETLTSPASALHSVAVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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