NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32314.1 Public Homo sapiens 15 HDGFL3 24 110 108 CCDS HistoryNCBI Gene:50810Re-query CCDS DB by CCDS ID:32314.1Re-query CCDS DB by GeneID:50810See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32314.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299633.7 ENSP00000299633.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299633.7Link to Ensembl Protein Viewer:ENSP00000299633.4Re-query CCDS DB by Nucleotide ID:ENST00000299633Re-query CCDS DB by Protein ID:ENSP00000299633
Original member Current member NCBI NM_016073.4 NP_057157.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016073.4Link to Protein Sequence:NP_057157.1Re-query CCDS DB by Nucleotide ID:NM_016073Re-query CCDS DB by Protein ID:NP_057157Link to BLAST:NP_057157.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057157.1 203 Q9Y3E1 203 100% 0 0

Chromosomal Locations for CCDS 32314.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 83139270 83139275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83151215 83151361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83157415 83157573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83157903 83158041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83163999 83164075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83207331 83207414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGCGCGTCCGCGGCCCCGCGAGTACAAAGCGGGCGACCTGGTCTTCGCCAAGATGAAGGGCTACCCGC
ACTGGCCGGCCCGGATTGATGAACTCCCAGAGGGCGCTGTGAAGCCTCCAGCAAACAAGTATCCTATCTT
CTTTTTTGGCACCCATGAAACTGCATTTCTAGGTCCCAAAGACCTTTTTCCATATAAGGAGTACAAAGAC
AAGTTTGGAAAGTCAAACAAACGGAAAGGATTTAACGAAGGATTGTGGGAAATAGAAAATAACCCAGGAG
TAAAGTTTACTGGCTACCAGGCAATTCAGCAACAGAGCTCTTCAGAAACTGAGGGAGAAGGTGGAAATAC
TGCAGATGCAAGCAGTGAGGAAGAAGGTGATAGAGTAGAAGAAGATGGAAAAGGCAAAAGAAAGAATGAA
AAAGCAGGCTCAAAACGGAAAAAGTCATATACTTCAAAGAAATCCTCTAAACAGTCCCGGAAATCTCCAG
GAGATGAAGATGACAAAGACTGCAAAGAAGAGGAAAACAAAAGCAGCTCTGAGGGTGGAGATGCGGGCAA
CGACACAAGAAACACAACTTCAGACTTGCAGAAAACCAGTGAAGGGACCTAA

Translation (203 aa):
MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKD
KFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEGDRVEEDGKGKRKNE
KAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGGDAGNDTRNTTSDLQKTSEGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH