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Report for CCDS32353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32353.1 Public Homo sapiens 16 CCDC78 24 110 108 CCDS HistoryNCBI Gene:124093Re-query CCDS DB by CCDS ID:32353.1Re-query CCDS DB by GeneID:124093See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32353.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293889.10 ENSP00000293889.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000293889.10Link to Ensembl Protein Viewer:ENSP00000293889.6Re-query CCDS DB by Nucleotide ID:ENST00000293889Re-query CCDS DB by Protein ID:ENSP00000293889
Original member Current member NCBI NM_001031737.3 NP_001026907.2 Accepted alive Link to Nucleotide Sequence:NM_001031737.3Link to Protein Sequence:NP_001026907.2Re-query CCDS DB by Nucleotide ID:NM_001031737Re-query CCDS DB by Protein ID:NP_001026907Link to BLAST:NP_001026907.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026907.2 438 A2IDD5-1 438 100% 0 0

Chromosomal Locations for CCDS 32353.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 722770 722789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 722922 723018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 723095 723161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 723857 723936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 724106 724205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 724322 724509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 724681 724806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 724911 724989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 725078 725145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 725237 725293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 725413 725580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 725794 725880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 725966 726085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 726308 726367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGGAGCACGCAGCCACCACAGGCCCCAGGCCTGGACCTCCCTCTCGGCGGGTGGAGAATGTTGTGCTAC
GAGCCAAGGACTGGCTGCCAGGAGCTCCTGGGGGCACCGCAGTGTGGGCCACCAGCTTGGAAGCAGAGGT
CCCACCAGATCTAGCGCTCAATAAGGAGCAGCAGCTGCAGATCTCCAAGGAGCTGGTCGACATTCAGATC
ACAACCCACCACCTACATGAGCAGCATGAGGCTGAAATCTTCCAGCTGAAGAGTGAGATCCTTCGGCTGG
AGAGCCGGGTACTGGAGCTGGAGCTGCGAGGAGATGGCACCAGCCAGGGCTGTGCAGTCCCAGTGGAGTC
TGACCCCAGGCATCCCCGGGCAGCAGCCCAAGAGCTCAGACACAAAGCCCAGGTGCCTGGACACTCTGAT
GACCACAGATTCCAGGTGCAGCCCAAGAACACCATGAACCCCGAGAATGAGCAGCACAGGCTGGGGAGCG
GCCTGCAGGGGGAAGTGAAGTGGGCGCTGGAGCATCAGGAGGCCCGGCAGCAGGCACTGGTGACGCGTGT
GGCAACCCTGGGCCGGCAGCTGCAGGGAGCCCGAGAGGAGGCCAGGGCAGCCGGGCAGCGACTGGCCACA
CAGGCTGTGGTGCTGTGCAGCTGCCAAGGCCAGCTCCGTCAGGCAGAGGCTGAAAATGCCCGGCTGCAGC
TGCAGCTCAAGAAACTGAAGGATGAGTACGTCCTACGGCTGCAACACTGCGCCTGGCAGGCAGTGGAGCA
CGCAGATGGTGCAGGCCAAGCGCCAGCCACCACGGCCCTCCGGACATTCCTGGAGGCGACTCTGGAGGAC
ATCCGGGCAGCGCACCGCAGCCGTGAGCAGCAGCTGGCCCGGGCTGCCCGCAGCTACCACAAGAGGCTGG
TGGATCTGAGCCGCAGGCATGAAGAGCTACTGGTTGCCTACAGGGCACCTGGGAACCCCCAAGCTATTTT
TGACATAGCCAGCTTGGACCTGGAACCATTGCCCGTGCCCCTGGTCACTGACTTCAGCCATCGGGAGGAC
CAGCACGGCGGGCCTGGGGCACTGCTCTCATCCCCAAAAAAGAGACCCGGTGGAGCCTCCCAGGGGGGAA
CATCAGAGCCACAGGGCCTGGACGCTGCATCCTGGGCCCAGATCCACCAGAAGCTCCGGGACTTCTCCCG
CAGCACCCAGAGCTGGAACGGGAGCGGGCACAGCTGCTGGTCCGGGCCACGATGGCTGAAGAGCAACTTT
CTGAGCTACAGGAGTACGTGGACCAGCACCTGGGCAGGTACAAGCACGAAATCCTGA

Translation (438 aa):
MEHAATTGPRPGPPSRRVENVVLRAKDWLPGAPGGTAVWATSLEAEVPPDLALNKEQQLQISKELVDIQI
TTHHLHEQHEAEIFQLKSEILRLESRVLELELRGDGTSQGCAVPVESDPRHPRAAAQELRHKAQVPGHSD
DHRFQVQPKNTMNPENEQHRLGSGLQGEVKWALEHQEARQQALVTRVATLGRQLQGAREEARAAGQRLAT
QAVVLCSCQGQLRQAEAENARLQLQLKKLKDEYVLRLQHCAWQAVEHADGAGQAPATTALRTFLEATLED
IRAAHRSREQQLARAARSYHKRLVDLSRRHEELLVAYRAPGNPQAIFDIASLDLEPLPVPLVTDFSHRED
QHGGPGALLSSPKKRPGGASQGGTSEPQGLDAASWAQIHQKLRDFSRSTQSWNGSGHSCWSGPRWLKSNF
LSYRSTWTSTWAGTSTKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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