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Report for CCDS3236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3236.1 Public Homo sapiens 3 PEX5L 24 110 108 CCDS HistoryNCBI Gene:51555Re-query CCDS DB by CCDS ID:3236.1Re-query CCDS DB by GeneID:51555See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3236.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000467460.6 ENSP00000419975.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000467460.6Link to Ensembl Protein Viewer:ENSP00000419975.1Re-query CCDS DB by Nucleotide ID:ENST00000467460Re-query CCDS DB by Protein ID:ENSP00000419975
Original member Current member NCBI NM_016559.3 NP_057643.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016559.3Link to Protein Sequence:NP_057643.1Re-query CCDS DB by Nucleotide ID:NM_016559Re-query CCDS DB by Protein ID:NP_057643Link to BLAST:NP_057643.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057643.1 626 Q8IYB4-1 626 100% 0 0

Chromosomal Locations for CCDS 3236.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 179801828 179802032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179807674 179807831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179808272 179808437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179809471 179809668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179811801 179811871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179815861 179816004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179819860 179819976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179859062 179859157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179874327 179874423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179875354 179875477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179879929 179880123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179887673 179887784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179898142 179898246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179971594 179971665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180036579 180036599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGTACCAGGGACACATGCAGAAAAGTAAAGAACAAGGATATGGAAAACTAAGCAGTGATGAAGACCTCG
AAATAATTGTTGATCAAAAGCAGGGAAAAGGCTCTAGGGCGGCAGATAAGGCTGTTGCCATGGTGATGAA
GGAGATACCGAGGGAGGAGTCTGCTGAAGAAAAGCCCCTCCTTACTATGACATCACAGCTGGTGAATGAG
CAACAAGAAAGCAGACCCCTCCTGAGTCCCTCCATCGATGACTTTCTCTGTGAAACCAAATCGGAAGCAA
TAGCAAGGCCAGTAACATCCAATACAGCTGTATTGACCACTGGCTTAGATCTCCTCGACCTGAGTGAACC
AGTCTCTCAAACCCAAACCAAAGCCAAGAAGTCAGAGCCCTCATCAAAAACCTCATCCCTCAAGAAAAAG
GCCGATGGATCTGACCTCATCAGCACGGATGCTGAGCAGAGAGGCCAGCCTCTCAGAGTCCCGGAGACTT
CATCCTTAGATCTAGACATTCAAACACAACTGGAAAAATGGGACGATGTTAAGTTTCATGGAGATCGAAA
TACCAAGGGACATCCAATGGCAGAGAGAAAATCATCCTCATCTAGAACTGGATCAAAAGAGCTCTTATGG
TCCTCAGAACACAGATCTCAACCAGAACTGAGTGGTGGAAAAAGCGCCCTCAACTCTGAGTCGGCTTCAG
AATTGGAATTAGTGGCTCCGACTCAGGCTCGACTGACCAAAGAACATCGCTGGGGAAGCGCATTACTTTC
TAGAAACCACTCCTTAGAAGAAGAGTTTGAAAGGGCAAAAGCAGCAGTGGAGTCAGATACAGAGTTTTGG
GATAAGATGCAAGCAGAATGGGAAGAAATGGCTCGGAGGAACTGGATATCTGAGAACCAAGAAGCCCAGA
ACCAAGTAACCATCTCGGCTAGTGAGAAGGGATATTACTTTCACACTGAAAACCCCTTCAAGGACTGGCC
TGGAGCATTTGAAGAAGGCTTAAAAAGGCTGAAGGAAGGGGATCTGCCAGTCACCATCCTGTTCATGGAA
GCAGCAATTCTTCAGGACCCTGGAGATGCAGAGGCATGGCAGTTCCTCGGGATAACCCAGGCGGAGAATG
AAAATGAACAAGCAGCTATTGTCGCCCTCCAGAGGTGCTTAGAATTACAGCCCAACAACTTAAAAGCTTT
GATGGCCTTGGCTGTGAGTTATACTAACACTGGCCATCAGCAGGATGCCTGTGACGCTCTGAAGAATTGG
ATTAAGCAAAATCCAAAGTACAAATACCTTGTGAAAAGCAAGAAGGGATCTCCAGGCCTCACCCGGCGGA
TGTCTAAGTCCCCAGTTGATAGCTCTGTTCTGGAAGGGGTGAAGGAATTATATCTGGAAGCTGCCCACCA
AAATGGAGATATGATCGACCCAGACCTGCAGACAGGTCTAGGGGTTCTGTTCCACCTGAGTGGAGAATTT
AATAGAGCAATAGATGCATTTAACGCTGCCTTAACTGTTCGGCCAGAGGACTATTCACTATGGAACCGCC
TCGGGGCGACCTTGGCGAACGGAGACCGCAGCGAGGAAGCCGTGGAGGCCTATACGCGAGCACTGGAGAT
TCAGCCAGGATTCATCCGGTCCAGATACAACCTAGGAATAAGCTGCATCAACCTGGGCGCCTACAGAGAA
GCGGTCAGCAATTTTCTCACTGCCCTCAGTTTGCAAAGAAAGAGCAGGAATCAGCAGCAAGTTCCTCATC
CTGCAATCTCTGGGAATATCTGGGCTGCCCTCAGAATTGCGCTCTCTCTGATGGACCAACCAGAACTCTT
CCAGGCGGCTAATCTTGGTGACCTGGATGTCCTCTTAAGAGCTTTCAACTTGGATCCTTGA

Translation (626 aa):
MYQGHMQKSKEQGYGKLSSDEDLEIIVDQKQGKGSRAADKAVAMVMKEIPREESAEEKPLLTMTSQLVNE
QQESRPLLSPSIDDFLCETKSEAIARPVTSNTAVLTTGLDLLDLSEPVSQTQTKAKKSEPSSKTSSLKKK
ADGSDLISTDAEQRGQPLRVPETSSLDLDIQTQLEKWDDVKFHGDRNTKGHPMAERKSSSSRTGSKELLW
SSEHRSQPELSGGKSALNSESASELELVAPTQARLTKEHRWGSALLSRNHSLEEEFERAKAAVESDTEFW
DKMQAEWEEMARRNWISENQEAQNQVTISASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFME
AAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTGHQQDACDALKNW
IKQNPKYKYLVKSKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF
NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE
AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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