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Report for CCDS32365.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32365.1 Public Homo sapiens 16 SPSB3 24 110 108 CCDS HistoryNCBI Gene:90864Re-query CCDS DB by CCDS ID:32365.1Re-query CCDS DB by GeneID:90864See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32365.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301717.8 ENSP00000301717.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301717.8Link to Ensembl Protein Viewer:ENSP00000301717.4Re-query CCDS DB by Nucleotide ID:ENST00000301717Re-query CCDS DB by Protein ID:ENSP00000301717
Original member Current member EBI ENST00000566339.6 ENSP00000457206.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000566339.6Link to Ensembl Protein Viewer:ENSP00000457206.1Re-query CCDS DB by Nucleotide ID:ENST00000566339Re-query CCDS DB by Protein ID:ENSP00000457206
Original member Current member NCBI NM_001324081.1 NP_001311010.1 Accepted alive Link to Nucleotide Sequence:NM_001324081.1Link to Protein Sequence:NP_001311010.1Re-query CCDS DB by Nucleotide ID:NM_001324081Re-query CCDS DB by Protein ID:NP_001311010Link to BLAST:NP_001311010.1
Original member Current member NCBI NM_080861.4 NP_543137.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080861.4Link to Protein Sequence:NP_543137.2Re-query CCDS DB by Nucleotide ID:NM_080861Re-query CCDS DB by Protein ID:NP_543137Link to BLAST:NP_543137.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311010.1 355 Q6PJ21 355 100% 0 0
NP_543137.2 355 Q6PJ21 355 100% 0 0

Chromosomal Locations for CCDS 32365.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 1777097 1777443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1777747 1777872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1777946 1778048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1778134 1778321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1778435 1778612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1781358 1781483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGCCAGACGCCCCCGGAACAGCAGGGCCTGGCACTTCGTCCTGAGTGCAGCCCGCCGAGACGCAGATG
CCCGGGCCGTGGCTCTAGCAGGCTCCACTAACTGGGGCTACGACTCTGATGGGCAGCACAGCGACTCGGA
CTCCGACCCCGAGTACTCCACGCTGCCGCCATCCATCCCCAGTGCGGTGCCCGTGACCGGCGAGTCCTTC
TGTGACTGTGCTGGGCAGAGCGAGGCCTCCTTCTGTAGCAGCCTGCACTCGGCCCACCGGGGCAGGGACT
GCCGCTGCGGAGAGGAAGACGAGTATTTCGACTGGGTCTGGGATGACTTAAATAAGTCATCAGCCACCCT
GCTGAGCTGTGACAACCGTAAGGTCAGCTTCCACATGGAGTACAGCTGCGGCACAGCGGCCATCCGGGGC
ACCAAGGAGCTGGGGGAGGGCCAGCACTTCTGGGAGATCAAGATGACCTCTCCCGTCTACGGCACCGACA
TGATGGTGGGCATCGGGACGTCGGATGTGGACCTGGACAAATACCGCCACACGTTCTGCAGCCTGCTGGG
CAGGGATGAGGACAGCTGGGGCCTCTCCTACACGGGCCTCCTCCACCACAAGGGCGACAAGACCAGCTTC
TCATCGCGGTTCGGCCAGGGCTCCATCATTGGCGTGCACCTGGACACCTGGCACGGCACACTCACCTTTT
TCAAGAACAGGAAGTGTATAGGTGTGGCAGCCACCAAGCTGCAGAACAAGAGATTCTACCCGATGGTGTG
CTCCACGGCGGCCCGGAGCAGCATGAAGGTCACCCGCTCCTGTGCCAGCGCCACTTCCCTCCAGTACCTG
TGCTGCCACCGCCTGCGCCAGCTGCGGCCAGACTCGGGAGACACGCTGGAGGGTCTGCCGCTGCCGCCGG
GCCTCAAGCAGGTGCTACACAACAAGCTGGGCTGGGTCCTGAGCATGAGTTGCAGCCGCCGCAAGGCTCC
AGTGTCCGATCCCCAGGCAGCGACCTCCGCCCACCCCAGCAGTCGCGAGCCTCGGCCCTGCCAGAGGAAG
CGCTGCCGCCGGACCTGA

Translation (355 aa):
MARRPRNSRAWHFVLSAARRDADARAVALAGSTNWGYDSDGQHSDSDSDPEYSTLPPSIPSAVPVTGESF
CDCAGQSEASFCSSLHSAHRGRDCRCGEEDEYFDWVWDDLNKSSATLLSCDNRKVSFHMEYSCGTAAIRG
TKELGEGQHFWEIKMTSPVYGTDMMVGIGTSDVDLDKYRHTFCSLLGRDEDSWGLSYTGLLHHKGDKTSF
SSRFGQGSIIGVHLDTWHGTLTFFKNRKCIGVAATKLQNKRFYPMVCSTAARSSMKVTRSCASATSLQYL
CCHRLRQLRPDSGDTLEGLPLPPGLKQVLHNKLGWVLSMSCSRRKAPVSDPQAATSAHPSSREPRPCQRK
RCRRT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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