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Report for CCDS32397.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32397.3 Public Homo sapiens 16 VPS35L 24 110 108 CCDS HistoryNCBI Gene:57020Re-query CCDS DB by CCDS ID:32397.3Re-query CCDS DB by GeneID:57020See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 32397.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32397.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417362.7 ENSP00000395973.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000417362.7Link to Ensembl Protein Viewer:ENSP00000395973.3Re-query CCDS DB by Nucleotide ID:ENST00000417362Re-query CCDS DB by Protein ID:ENSP00000395973
Original member Current member NCBI NM_020314.7 NP_064710.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020314.7Link to Protein Sequence:NP_064710.5Re-query CCDS DB by Nucleotide ID:NM_020314Re-query CCDS DB by Protein ID:NP_064710Link to BLAST:NP_064710.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064710.5 963 Q7Z3J2-1 963 100% 0 0

Chromosomal Locations for CCDS 32397.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 19555730 19555746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19564851 19564950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19569424 19569591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19573119 19573241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19575098 19575122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19579052 19579128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19581525 19581653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19591790 19591874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19601664 19601723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19608178 19608274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19608974 19609021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19610322 19610415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19616114 19616191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19616686 19616808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19626177 19626223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19627694 19627805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19628637 19628753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19629767 19629820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19633092 19633172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19637594 19637656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19640015 19640100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19642396 19642476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19644886 19644949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19647784 19647882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19650382 19650459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19651976 19652090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19669160 19669299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19682225 19682390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19691353 19691471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19699502 19699648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19700378 19700476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2892 nt):
ATGGCCGTCTTTCCTTGGCACTCCAGGAATAGGAACTACAAAGCTGAATTTGCATCATGCCGACTGGAGG
CTGTACCATTGGAGTTTGGGGACTATCACCCTCTGAAACCCATAACTGTCACAGAGTCAAAGACAAAGAA
AGTGAACCGGAAAGGAAGCACTTCTTCCACGTCCTCCTCCTCCTCCAGCTCCGTGGTGGACCCGCTGAGC
AGCGTCCTCGATGGGACTGACCCCCTCTCCATGTTTGCAGCCACTGCTGACCCCGCAGCCTTGGCAGCTG
CCATGGACAGCTCCAGAAGGAAACGTGATAGAGATGATAACTCCGTTGTAGGATCGGATTTTGAGCCTTG
GACCAACAAACGGGGAGAAATCCTTGCCCGGTACACCACTACCGAAAAGCTGTCTATTAATCTGTTTATG
GGATCTGAAAAAGGCAAAGCTGGGACTGCCACATTGGCAATGTCAGAGAAGGTGCGGACCCGGCTGGAGG
AGCTGGATGACTTTGAGGAGGGTTCCCAAAAGGAGCTGTTGAACTTGACTCAGCAGGATTACGTGAACCG
CATAGAGGAGCTCAACCAATCGCTGAAGGATGCCTGGGCCTCAGACCAGAAAGTGAAGGCTCTAAAAATA
GTCATCCAGTGTTCAAAGCTTCTTTCAGACACCAGTGTTATTCAGTTCTACCCAAGCAAATTTGTCCTTA
TCACCGACATACTTGATACATTTGGAAAGCTCGTGTACGAGCGCATCTTTTCCATGTGTGTGGATAGCCG
CAGCGTCTTACCAGATCACTTTTCTCCAGAGAATGCAAATGACACGGCCAAGGAAACATGCCTAAATTGG
TTTTTCAAGATTGCCTCCATCAGGGAACTCATTCCAAGATTTTACGTGGAGGCATCCATCCTGAAATGTA
ACAAATTCCTCTCCAAAACGGGAATTTCAGAGTGCCTGCCCCGGTTGACATGCATGATCAGAGGGATCGG
AGACCCACTAGTGTCGGTGTATGCCCGTGCCTACCTGTGCCGGGTGGGAATGGAAGTGGCCCCACATCTC
AAAGAAACCCTAAATAAGAACTTTTTTGACTTCCTCCTTACGTTCAAACAGATTCATGGGGATACGGTCC
AGAACCAGCTGGTGGTCCAAGGAGTGGAGCTCCCATCTTACCTCCCCTTGTACCCGCCTGCCATGGACTG
GATCTTCCAGTGCATCTCCTACCATGCCCCCGAGGCTCTGCTGACCGAGATGATGGAAAGGTGTAAGAAA
CTAGGAAACAATGCCTTGCTGTTGAATTCTGTGATGTCTGCCTTCCGGGCTGAGTTCATCGCCACAAGGT
CTATGGATTTCATTGGCATGATTAAAGAGTGTGATGAATCTGGTTTCCCCAAGCATCTTCTTTTTCGATC
ACTGGGATTAAACTTGGCCTTGGCTGATCCTCCTGAGAGTGACCGACTTCAGATTCTCAACGAAGCTTGG
AAAGTCATCACTAAGCTGAAGAACCCACAGGACTACATTAATTGTGCCGAAGTGTGGGTGGAATACACCT
GCAAGCATTTCACGAAACGAGAGGTGAATACCGTTTTGGCAGATGTCATCAAGCACATGACTCCAGATCG
TGCATTTGAAGATTCCTACCCCCAGCTTCAGTTAATAATTAAGAAAGTTATTGCCCACTTCCATGACTTC
TCAGTTCTTTTCTCAGTGGAAAAATTTCTGCCGTTTCTGGACATGTTCCAAAAAGAGAGTGTGCGGGTGG
AGGTTTGCAAATGCATCATGGACGCCTTTATCAAGCATCAACAAGAGCCCACCAAGGACCCGGTCATCTT
GAATGCCCTTTTGCATGTTTGCAAGACCATGCATGACTCTGTGAATGCACTCACTCTTGAGGATGAGAAA
AGAATGCTGTCATATTTGATTAATGGATTTATAAAAATGGTTTCCTTTGGCCGTGATTTTGAACAACAGC
TGAGTTTTTATGTTGAGTCCAGGTCGATGTTTTGCAATCTGGAGCCTGTTCTTGTGCAGTTGATTCATAG
TGTGAACCGGTTGGCAATGGAGACAAGAAAAGTAATGAAAGGAAATCATTCCAGAAAGACAGCTGCATTT
GTCCGGGCCTGTGTTGCCTACTGCTTCATCACCATCCCCTCCCTGGCGGGCATCTTCACACGTCTCAATC
TCTACCTGCATTCTGGTCAGGTGGCCTTGGCCAACCAGTGCCTCTCCCAAGCTGATGCTTTTTTCAAAGC
CGCTATAAGCCTTGTTCCGGAAGTTCCAAAGATGATTAATATTGATGGGAAGATGCGGCCATCGGAATCG
TTCCTTCTGGAATTCCTCTGCAATTTCTTTTCTACTTTATTAATAGTTCCGGATCATCCTGAACATGGGG
TCCTGTTTCTTGTTCGAGAGCTTCTCAACGTGATCCAGGACTACACCTGGGAGGACAACAGCGATGAGAA
AATCCGCATCTACACCTGCGTCCTGCATCTCCTCTCCGCCATGAGCCAGGAGACGTACCTTTACCACATA
GACAAAGTGGACTCCAACGACAGCCTCTACGGGGGAGACTCCAAGTTCCTGGCAGAAAACAACAAGCTGT
GTGAGACGGTGATGGCTCAGATCCTAGAGCATCTGAAAACCCTGGCCAAGGACGAGGCCCTGAAGCGCCA
GAGCTCGTTGGGCCTTTCCTTCTTTAACAGCATCTTGGCCCATGGGGACCTACGCAACAACAAGCTCAAC
CAGCTCTCCGTCAACCTGTGGCACCTGGCACAGAGGCACGGCTGTGCAGACACCAGGACCATGGTGAAAA
CGCTAGAATACATCAAGAAGCAAAGCAAACAACCAGACATGACTCATCTGACGGAGCTGGCCCTCAGACT
CCCTCTGCAAACAAGGACCTGA

Translation (963 aa):
MAVFPWHSRNRNYKAEFASCRLEAVPLEFGDYHPLKPITVTESKTKKVNRKGSTSSTSSSSSSSVVDPLS
SVLDGTDPLSMFAATADPAALAAAMDSSRRKRDRDDNSVVGSDFEPWTNKRGEILARYTTTEKLSINLFM
GSEKGKAGTATLAMSEKVRTRLEELDDFEEGSQKELLNLTQQDYVNRIEELNQSLKDAWASDQKVKALKI
VIQCSKLLSDTSVIQFYPSKFVLITDILDTFGKLVYERIFSMCVDSRSVLPDHFSPENANDTAKETCLNW
FFKIASIRELIPRFYVEASILKCNKFLSKTGISECLPRLTCMIRGIGDPLVSVYARAYLCRVGMEVAPHL
KETLNKNFFDFLLTFKQIHGDTVQNQLVVQGVELPSYLPLYPPAMDWIFQCISYHAPEALLTEMMERCKK
LGNNALLLNSVMSAFRAEFIATRSMDFIGMIKECDESGFPKHLLFRSLGLNLALADPPESDRLQILNEAW
KVITKLKNPQDYINCAEVWVEYTCKHFTKREVNTVLADVIKHMTPDRAFEDSYPQLQLIIKKVIAHFHDF
SVLFSVEKFLPFLDMFQKESVRVEVCKCIMDAFIKHQQEPTKDPVILNALLHVCKTMHDSVNALTLEDEK
RMLSYLINGFIKMVSFGRDFEQQLSFYVESRSMFCNLEPVLVQLIHSVNRLAMETRKVMKGNHSRKTAAF
VRACVAYCFITIPSLAGIFTRLNLYLHSGQVALANQCLSQADAFFKAAISLVPEVPKMINIDGKMRPSES
FLLEFLCNFFSTLLIVPDHPEHGVLFLVRELLNVIQDYTWEDNSDEKIRIYTCVLHLLSAMSQETYLYHI
DKVDSNDSLYGGDSKFLAENNKLCETVMAQILEHLKTLAKDEALKRQSSLGLSFFNSILAHGDLRNNKLN
QLSVNLWHLAQRHGCADTRTMVKTLEYIKKQSKQPDMTHLTELALRLPLQTRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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