NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32435.1 Public Homo sapiens 16 SETD1A 24 110 108 CCDS HistoryNCBI Gene:9739Re-query CCDS DB by CCDS ID:32435.1Re-query CCDS DB by GeneID:9739See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32435.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262519.14 ENSP00000262519.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262519.14Link to Ensembl Protein Viewer:ENSP00000262519.8Re-query CCDS DB by Nucleotide ID:ENST00000262519Re-query CCDS DB by Protein ID:ENSP00000262519
Original member Current member EBI ENST00000684162.1 ENSP00000507683.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684162.1Link to Ensembl Protein Viewer:ENSP00000507683.1Re-query CCDS DB by Nucleotide ID:ENST00000684162Re-query CCDS DB by Protein ID:ENSP00000507683
Original member Current member NCBI NM_014712.3 NP_055527.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014712.3Link to Protein Sequence:NP_055527.1Re-query CCDS DB by Nucleotide ID:NM_014712Re-query CCDS DB by Protein ID:NP_055527Link to BLAST:NP_055527.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055527.1 1707 O15047 1707 100% 0 0

Chromosomal Locations for CCDS 32435.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30958732 30958881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30959091 30959186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30961267 30961537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30963433 30963554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30964094 30964323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30964612 30965461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30965601 30966386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30966884 30967060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30967501 30967588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30969305 30969462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30969602 30969689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30971378 30971719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30979145 30980194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30980485 30980657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30980739 30980849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30981061 30981180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30983635 30983772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30983850 30984023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5124 nt):
ATGGATCAGGAAGGTGGGGGAGATGGGCAGAAGGCCCCGAGCTTCCAGTGGCGGAACTACAAGCTCATCG
TGGATCCTGCCTTGGACCCTGCCCTGCGCAGGCCTTCTCAGAAGGTGTACCGCTATGATGGAGTCCACTT
CAGTGTCAACGACTCAAAGTATATACCAGTCGAAGACCTCCAAGACCCCCGTTGCCATGTCAGGTCCAAA
AACAGAGACTTTTCCCTCCCAGTCCCTAAGTTTAAGCTGGACGAGTTCTATATTGGACAGATTCCACTGA
AGGAAGTGACTTTTGCAAGGCTGAATGACAACGTGCGGGAGACCTTCCTGAAGGATATGTGCCGTAAGTA
CGGTGAGGTGGAAGAGGTAGAGATCCTCCTTCACCCCCGTACGCGCAAGCACCTGGGCCTGGCCCGTGTG
CTCTTCACCAGCACTCGGGGCGCCAAGGAAACGGTCAAAAACCTCCACCTTACCTCCGTCATGGGCAACA
TCATCCATGCCCAGCTTGACATCAAAGGACAACAACGAATGAAATACTATGAACTAATTGTCAATGGCTC
CTACACCCCTCAGACTGTGCCCACTGGGGGCAAGGCCCTGAGTGAGAAGTTCCAAGGCTCGGGTGCAGCC
ACTGAGACGGCCGAATCCCGCCGCCGCTCTTCCTCTGACACAGCTGCCTACCCAGCAGGCACCACTGCGG
TGGGCACTCCTGGCAACGGCACCCCCTGCTCCCAGGACACAAGCTTCTCCAGCAGCCGACAAGATACCCC
ATCTTCCTTTGGCCAGTTCACACCTCAGTCCTCCCAAGGAACCCCCTACACGTCTCGGGGCAGCACCCCC
TACTCTCAGGACTCTGCCTACTCCAGCAGCACCACTTCAACCTCCTTCAAGCCCCGGCGGTCAGAGAACA
GCTACCAAGATGCCTTTTCCCGCCGCCACTTCTCTGCATCTTCAGCCTCCACAACCGCCTCCACGGCCAT
CGCCGCCACCACTGCAGCCACTGCCTCATCCTCCGCCTCTTCCTCCTCATTGTCCTCGTCCTCCTCGTCA
TCCTCTTCCTCCTCGTCCTCTCAGTTTCGTAGTTCTGATGCAAACTACCCAGCGTATTATGAAAGCTGGA
ATCGCTACCAGCGCCATACTTCCTACCCACCACGCCGGGCCACACGGGAGGAACCCCCTGGAGCCCCTTT
TGCTGAAAATACAGCTGAGCGCTTCCCACCTTCTTACACCTCCTACCTGCCCCCCGAGCCCAGCCGGCCC
ACCGACCAGGACTACCGGCCTCCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTGGTGGAGGCG
GGGGTGGAGGAGGGCCCAGCCCTGAGAGAGAAGAAGTTCGGACTTCCCCCCGCCCAGCCTCCCCTGCCCG
CTCTGGCTCCCCAGCCCCGGAGACCACCAATGAGAGTGTGCCCTTCGCCCAGCACAGCAGCCTGGATTCC
CGCATCGAGATGCTGCTGAAGGAGCAGCGCTCCAAGTTTTCCTTCTTGGCCTCTGACACAGAGGAGGAGG
AAGAGAACAGCAGCATGGTCCTTGGGGCCAGAGATACAGGGAGTGAGGTGCCTTCTGGGTCAGGGCATGG
GCCCTGCACACCCCCTCCGGCCCCAGCTAATTTTGAGGATGTGGCACCTACAGGGAGCGGGGAGCCAGGG
GCTACCCGGGAGTCTCCCAAGGCAAATGGACAGAACCAGGCTTCTCCATGCTCTTCTGGAGACGACATGG
AGATCTCCGACGACGACCGGGGTGGCTCACCCCCTCCGGCCCCGACGCCCCCTCAGCAGCCTCCGCCACC
TCCCCCTCCCCCGCCGCCTCCTCCTCCCTACCTGGCGTCCCTTCCTCTTGGTTATCCTCCCCACCAACCT
GCCTACCTCCTCCCACCCAGACCTGATGGGCCGCCGCCCCCTGAGTACCCCCCACCTCCTCCACCACCCC
CGCACATCTATGACTTTGTGAACTCCTTGGAGCTCATGGACCGACTTGGGGCTCAGTGGGGAGGGATGCC
CATGTCCTTCCAGATGCAGACCCAGATGTTAACTCGGCTCCATCAGCTGCGGCAGGGCAAGGGATTGATT
GCCGCCTCAGCTGGCCCCCCCGGTGGGGCCTTTGGGGAGGCCTTCCTCCCGTTTCCACCCCCGCAGGAGG
CAGCCTACGGCTTGCCGTATGCTCTATATGCACAGGGGCAGGAGGGCAGAGGGGCATACTCACGGGAGGC
CTACCACCTGCCCATGCCAATGGCAGCCGAGCCCCTGCCCTCCTCCTCAGTCTCGGGAGAGGAGGCCCGG
CTGCCACCCAGGGAAGAAGCAGAGCTGGCAGAGGGCAAGACCCTCCCGACAGCAGGCACCGTGGGCCGTG
TGCTCGCCATGCTGGTCCAGGAGATGAAGAGCATCATGCAGCGAGACCTCAACCGCAAGATGGTGGAGAA
CGTGGCCTTCGGAGCCTTTGACCAGTGGTGGGAGAGCAAGGAGGAGAAGGCCAAGCCATTCCAGAACGCG
GCCAAGCAGCAAGCCAAGGAGGAGGATAAAGAGAAGACGAAGCTGAAGGAGCCTGGCCTGCTGTCCCTCG
TGGACTGGGCCAAGAGCGGGGGCACTACGGGCATCGAGGCTTTCGCCTTTGGGTCAGGGCTGAGAGGGGC
CCTGCGGCTGCCTTCATTCAAGGTAAAGCGGAAAGAGCCATCGGAAATTTCCGAGGCCAGTGAGGAAAAG
AGGCCTCGTCCCTCCACTCCTGCTGAGGAAGATGAAGACGACCCTGAACAAGAGAAGGAGGCTGGAGAGC
CAGGACGTCCGGGGACCAAGCCCCCGAAGCGGGACGAAGAGCGAGGCAAGACCCAGGGCAAGCACCGCAA
GTCCTTTGCTCTGGACAGCGAAGGGGAGGAGGCATCCCAGGAGTCCTCCTCGGAGAAGGATGAGGAGGAT
GACGAGGAAGATGAGGAAGATGAAGATCGAGAGGAAGCTGTGGATACCACAAAGAAGGAGACAGAGGTGT
CGGATGGCGAGGACGAGGAAAGCGATTCGTCTTCCAAATGTTCTCTGTATGCTGACTCAGATGGCGAAAA
TGACAGCACATCAGACTCCGAGAGCAGCAGCTCTTCCAGCTCCTCATCCTCCTCCTCCTCCTCGTCCTCA
TCCTCCTCGTCCTCTTCATCCTCTGAGTCCTCCTCTGAAGATGAAGAGGAAGAGGAGCGGCCAGCAGCCC
TTCCCTCAGCCTCCCCGCCCCCCAGAGAAGTCCCAGTGCCCACGCCAGCACCTGTGGAGGTGCCAGTGCC
GGAAAGGGTTGCAGGCTCCCCAGTCACACCCCTGCCCGAACAGGAGGCGTCTCCAGCAAGGCCTGCAGGC
CCCACGGAGGAGTCACCCCCCAGTGCGCCTCTGCGTCCCCCAGAACCACCTGCTGGGCCCCCGGCCCCTG
CCCCACGCCCCGATGAGCGTCCCTCTTCTCCCATCCCCCTCCTGCCCCCACCCAAGAAACGCCGGAAAAC
TGTCTCCTTCTCTGCCATCGAGGTGGTGCCAGCCCCGGAGCCCCCTCCAGCCACACCGCCGCAGGCCAAG
TTTCCCGGCCCAGCCTCCCGCAAGGCTCCCCGGGGCGTGGAGCGGACCATCCGCAACCTGCCCCTGGACC
ACGCATCTCTGGTCAAGAGTTGGCCCGAGGAGGTGTCCCGAGGAGGCCGGAGCCGGGCTGGAGGCCGAGG
CCGCCTCACCGAGGAAGAGGAGGCTGAGCCAGGGACAGAGGTGGACCTGGCGGTCCTGGCCGACCTGGCC
CTGACCCCTGCCCGGCGCGGGCTGCCTGCCCTGCCTGCTGTTGAAGACTCAGAGGCCACAGAGACATCGG
ACGAGGCCGAGCGCCCTAGGCCCCTGCTCAGCCACATCCTCCTGGAGCACAACTATGCCCTGGCCGTCAA
GCCCACGCCCCCTGCGCCAGCCCTGCGGCCCCCGGAGCCAGTGCCCGCACCCGCCGCCCTCTTCAGTTCC
CCAGCTGATGAGGTCCTGGAGGCCCCCGAGGTGGTGGTGGCTGAGGCGGAGGAGCCCAAGCCGCAGCAAC
TGCAGCAGCAGCGGGAGGAGGGCGAAGAGGAGGGGGAGGAAGAGGGGGAGGAAGAGGAGGAGGAGTCCTC
TGACAGCAGCAGCAGCAGCGATGGGGAGGGCGCCCTCCGGAGGCGCAGCCTCCGCTCCCACGCCCGGCGC
CGCCGCCCTCCGCCCCCACCCCCGCCGCCACCGCCCCGCGCCTACGAGCCACGCAGTGAGTTTGAACAGA
TGACCATCCTGTATGACATTTGGAACTCGGGCCTGGACTCAGAGGACATGAGTTACCTGCGGCTTACGTA
CGAGCGGCTGCTGCAGCAGACAAGCGGGGCTGACTGGCTCAACGACACTCACTGGGTCCATCACACAATC
ACCAACCTGACCACCCCAAAACGCAAGCGGCGGCCCCAGGATGGGCCCCGGGAGCACCAGACAGGCTCAG
CCCGCAGCGAAGGCTACTACCCCATCAGCAAGAAGGAGAAGGACAAGTACCTGGACGTGTGCCCAGTCTC
GGCCCGGCAGCTGGAGGGCGTGGACACTCAGGGGACGAACCGCGTGCTGTCCGAGCGCCGGTCCGAGCAG
CGGCGGCTGCTGAGCGCCATCGGTACCTCCGCCATCATGGACAGTGACCTGCTGAAACTCAACCAGCTCA
AGTTCCGGAAGAAGAAGCTCCGATTTGGCCGGAGCCGGATCCACGAGTGGGGTCTGTTTGCCATGGAACC
CATTGCTGCTGACGAGATGGTCATCGAATACGTGGGTCAGAACATCCGTCAGATGGTGGCCGACATGCGG
GAGAAGCGCTACGTGCAGGAGGGCATTGGCAGCAGCTACCTGTTCCGGGTGGACCACGACACCATCATCG
ATGCCACCAAGTGTGGCAACCTGGCCAGATTCATCAACCACTGCTGCACGCCTAACTGCTACGCCAAGGT
CATCACCATCGAGTCCCAGAAGAAGATCGTGATCTACTCCAAGCAGCCCATTGGCGTGGACGAGGAGATC
ACCTACGACTACAAGTTCCCACTGGAAGACAACAAGATCCCGTGTCTGTGTGGCACAGAGAGCTGCCGGG
GCTCCCTAAACTGA

Translation (1707 aa):
MDQEGGGDGQKAPSFQWRNYKLIVDPALDPALRRPSQKVYRYDGVHFSVNDSKYIPVEDLQDPRCHVRSK
NRDFSLPVPKFKLDEFYIGQIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARV
LFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQQRMKYYELIVNGSYTPQTVPTGGKALSEKFQGSGAA
TETAESRRRSSSDTAAYPAGTTAVGTPGNGTPCSQDTSFSSSRQDTPSSFGQFTPQSSQGTPYTSRGSTP
YSQDSAYSSSTTSTSFKPRRSENSYQDAFSRRHFSASSASTTASTAIAATTAATASSSASSSSLSSSSSS
SSSSSSSQFRSSDANYPAYYESWNRYQRHTSYPPRRATREEPPGAPFAENTAERFPPSYTSYLPPEPSRP
TDQDYRPPASEAPPPEPPEPGGGGGGGGPSPEREEVRTSPRPASPARSGSPAPETTNESVPFAQHSSLDS
RIEMLLKEQRSKFSFLASDTEEEEENSSMVLGARDTGSEVPSGSGHGPCTPPPAPANFEDVAPTGSGEPG
ATRESPKANGQNQASPCSSGDDMEISDDDRGGSPPPAPTPPQQPPPPPPPPPPPPPYLASLPLGYPPHQP
AYLLPPRPDGPPPPEYPPPPPPPPHIYDFVNSLELMDRLGAQWGGMPMSFQMQTQMLTRLHQLRQGKGLI
AASAGPPGGAFGEAFLPFPPPQEAAYGLPYALYAQGQEGRGAYSREAYHLPMPMAAEPLPSSSVSGEEAR
LPPREEAELAEGKTLPTAGTVGRVLAMLVQEMKSIMQRDLNRKMVENVAFGAFDQWWESKEEKAKPFQNA
AKQQAKEEDKEKTKLKEPGLLSLVDWAKSGGTTGIEAFAFGSGLRGALRLPSFKVKRKEPSEISEASEEK
RPRPSTPAEEDEDDPEQEKEAGEPGRPGTKPPKRDEERGKTQGKHRKSFALDSEGEEASQESSSEKDEED
DEEDEEDEDREEAVDTTKKETEVSDGEDEESDSSSKCSLYADSDGENDSTSDSESSSSSSSSSSSSSSSS
SSSSSSSSESSSEDEEEEERPAALPSASPPPREVPVPTPAPVEVPVPERVAGSPVTPLPEQEASPARPAG
PTEESPPSAPLRPPEPPAGPPAPAPRPDERPSSPIPLLPPPKKRRKTVSFSAIEVVPAPEPPPATPPQAK
FPGPASRKAPRGVERTIRNLPLDHASLVKSWPEEVSRGGRSRAGGRGRLTEEEEAEPGTEVDLAVLADLA
LTPARRGLPALPAVEDSEATETSDEAERPRPLLSHILLEHNYALAVKPTPPAPALRPPEPVPAPAALFSS
PADEVLEAPEVVVAEAEEPKPQQLQQQREEGEEEGEEEGEEEEEESSDSSSSSDGEGALRRRSLRSHARR
RRPPPPPPPPPPRAYEPRSEFEQMTILYDIWNSGLDSEDMSYLRLTYERLLQQTSGADWLNDTHWVHHTI
TNLTTPKRKRRPQDGPREHQTGSARSEGYYPISKKEKDKYLDVCPVSARQLEGVDTQGTNRVLSERRSEQ
RRLLSAIGTSAIMDSDLLKLNQLKFRKKKLRFGRSRIHEWGLFAMEPIAADEMVIEYVGQNIRQMVADMR
EKRYVQEGIGSSYLFRVDHDTIIDATKCGNLARFINHCCTPNCYAKVITIESQKKIVIYSKQPIGVDEEI
TYDYKFPLEDNKIPCLCGTESCRGSLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH