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Report for CCDS32500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32500.1 Public Homo sapiens 16 CIBAR2 24 110 108 CCDS HistoryNCBI Gene:339145Re-query CCDS DB by CCDS ID:32500.1Re-query CCDS DB by GeneID:339145See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32500.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539556.6 ENSP00000443411.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000539556.6Link to Ensembl Protein Viewer:ENSP00000443411.1Re-query CCDS DB by Nucleotide ID:ENST00000539556Re-query CCDS DB by Protein ID:ENSP00000443411
Original member Current member NCBI NM_198491.3 NP_940893.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198491.3Link to Protein Sequence:NP_940893.1Re-query CCDS DB by Nucleotide ID:NM_198491Re-query CCDS DB by Protein ID:NP_940893Link to BLAST:NP_940893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940893.1 304 Q6ZTR7 304 99.6711% 0 1

Chromosomal Locations for CCDS 32500.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 85099185 85099346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85100139 85100240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85102214 85102327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85105327 85105431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85107667 85107672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85107846 85107947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85108031 85108099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85110226 85110460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85112333 85112352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGAACATCGTCTTCTCCAGGGACAGCCAGGTGAGGGTGATGGAGAATACCGTGGCCAACACCGAGAAGT
ACTTTGGGCAGTTCTGCTCGCTGCTGGCCGCCTACACGCGCAAGACGGCCCGGCTGCGGGACAAGGCGGA
CCAGCTGGTCAAGCAGCTCATCGACTTTGCCAACTCCGAGAACCCCGAGCTGCGGGCCACCATGAGGGGC
TTCGCTGAGGACCTGGCCAAAGTGCAGGATTACCGGCAGGCCCAGGTCGAGAGGCTGGAGACCAAGGTGG
TCAACCCCCTGAAGCTCTACGGGGCACAGATCAAGCAGACACGGGCTGAGATCAAGAAATTCAAACATGT
CCAAAATCATGAGATCAAACAACTGGAAAAACTGGAGAAACTGAGGCAGAAGTCACCCTCGGATCAGCAA
ATGATCTCCCAGGCAGAGACCAGAGTGCAGAGGGCCGCTGTGGACTCCAGCCGCACCACCCTCCAGCTGG
AGGAGACTGTGGATGGCTTCCAGAGGCAGAAGCTCAAGGACCTGCAGAAATTTTTTTGTGACTTTGTAAC
TATTGAGATGGTTTTCCATGCCAAAGCGGTGGAGGTGTATTCTAGCGCCTTCCAGACCCTGGAGAAGTAT
GACCTGGAGAGGGATCTACTGGATTTTAGAGCCAAGATGCAAGGAGTTTATGGGCATTATGACACTCGGC
TGCTTGCCAACACCAGCCCCCCTCCATCTGTTCTTCAGTCTCTCGCCAGCCAGGGAACTCTGCAGGTCCA
GCTGAGTAGGGCAAATGAAGACCCTGAACATCCTCATGCCAATCATGGCAGGTTTAGTCTCTGTGAGTGG
GTGGTTAAGGGGCAGCCAGCCCACTGTGTGTGTGGGCAGGGTGGGCATCTCATGCTTCCAGGACATTCTC
TCTAA

Translation (304 aa):
MNIVFSRDSQVRVMENTVANTEKYFGQFCSLLAAYTRKTARLRDKADQLVKQLIDFANSENPELRATMRG
FAEDLAKVQDYRQAQVERLETKVVNPLKLYGAQIKQTRAEIKKFKHVQNHEIKQLEKLEKLRQKSPSDQQ
MISQAETRVQRAAVDSSRTTLQLEETVDGFQRQKLKDLQKFFCDFVTIEMVFHAKAVEVYSSAFQTLEKY
DLERDLLDFRAKMQGVYGHYDTRLLANTSPPPSVLQSLASQGTLQVQLSRANEDPEHPHANHGRFSLCEW
VVKGQPAHCVCGQGGHLMLPGHSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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