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Report for CCDS328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
328.1 Public Homo sapiens 1 GMEB1 24 110 108 CCDS HistoryNCBI Gene:10691Re-query CCDS DB by CCDS ID:328.1Re-query CCDS DB by GeneID:10691See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 328.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361872.8 ENSP00000355186.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361872.8Link to Ensembl Protein Viewer:ENSP00000355186.4Re-query CCDS DB by Nucleotide ID:ENST00000361872Re-query CCDS DB by Protein ID:ENSP00000355186
Original member Current member EBI ENST00000373816.6 ENSP00000362922.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373816.6Link to Ensembl Protein Viewer:ENSP00000362922.1Re-query CCDS DB by Nucleotide ID:ENST00000373816Re-query CCDS DB by Protein ID:ENSP00000362922
Original member Current member NCBI NM_001319674.2 NP_001306603.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001319674.2Link to Protein Sequence:NP_001306603.1Re-query CCDS DB by Nucleotide ID:NM_001319674Re-query CCDS DB by Protein ID:NP_001306603Link to BLAST:NP_001306603.1
Original member Current member NCBI NM_024482.3 NP_077808.1 Accepted alive Link to Nucleotide Sequence:NM_024482.3Link to Protein Sequence:NP_077808.1Re-query CCDS DB by Nucleotide ID:NM_024482Re-query CCDS DB by Protein ID:NP_077808Link to BLAST:NP_077808.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306603.1 563 Q9Y692-2 563 100% 0 0
NP_077808.1 563 Q9Y692-2 563 100% 0 0

Chromosomal Locations for CCDS 328.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 28683613 28683740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28690104 28690186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28691585 28691709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28692942 28693045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28696927 28697084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28702438 28702569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28704192 28704329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28710520 28710642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28714073 28714773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTTGTGGTACCTACTGAAGGAAATGAAGGGG
AGAATCCTGAAGACACTAAAACCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGGGATTTATGAAGC
TGGGTCGGAGAACAACACGGCAGTTGTAGCAGTAGAAACTCACACGATACACAAAATTGAAGAAGGGATT
GATACAGGCACTATAGAAGCAAATGAGGATATGGAAATTGCTTACCCCATAACTTGTGGGGAGAGCAAAG
CCATCCTCCTCTGGAAGAAGTTTGTATGTCCAGGAATAAACGTGAAGTGTGTCAAGTTCAATGATCAGTT
GATCAGCCCCAAGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTGAAGGACTGGAAGAGAGCTATTCGT
CTGGGTGGGATCATGCTCAGGAAAATGATGGACTCCGGACAGATTGATTTTTACCAACATGACAAAGTTT
GCTCCAATACCTGCAGAAGCACCAAATTTGATCTTCTGATCAGCAGTGCAAGAGCTCCAGTGCCAGGACA
GCAGACAAGTGTGGTGCAGACACCCACTTCGGCTGATGGTAGCATCACGCAGATTGCCATCTCAGAAGAG
AGCATGGAAGAGGCAGGGCTGGAATGGAACTCAGCTCTCACCGCTGCTGTCACCATGGCCACGGAGGAGG
GTGTAAAGAAAGACTCAGAGGAAATTTCAGAGGACACTTTGATGTTCTGGAAAGGAATAGCTGATGTAGG
GCTGATGGAAGAGGTTGTCTGCAATATACAGAAGGAAATAGAGGAGCTACTCAGGGGAGTTCAGCAGCGG
CTCATCCAGGCTCCCTTCCAAGTCACAGATGCTGCTGTTCTCAACAATGTAGCACACACATTTGGCCTAA
TGGACACAGTCAAGAAGGTTTTAGACAACAGAAGGAACCAAGTAGAGCAGGGAGAAGAACAGTTTCTCTA
TACTCTGACAGACTTGGAACGCCAGTTGGAGGAGCAGAAGAAGCAAGGCCAGGATCACAGGCTGAAATCT
CAGACAGTTCAAAATGTGGTACTGATGCCTGTGAGCACTCCTAAGCCTCCAAAAAGGCCCCGGCTCCAGC
GGCCAGCCTCCACCACTGTCTTGAGCCCTTCTCCTCCTGTCCAGCAGCCTCAGTTCACAGTCATCTCACC
CATCACCATCACCCCAGTGGGTCAGTCATTTTCCATGGGCAATATTCCAGTGGCCACCCTCAGCCAGGGC
TCCAGTCCTGTGACTGTCCACACACTGCCTTCTGGCCCTCAGCTCTTCCGCTATGCCACAGTGGTCTCCT
CTGCCAAGAGCAGCTCACCAGACACAGTGACCATCCACCCTTCATCTAGCTTGGCGCTGCTGAGCTCTAC
TGCCATGCAGGATGGGAGTACACTGGGCAACATGACCACCATGGTTAGCCCTGTGGAATTGGTGGCCATG
GAGTCCGGCCTAACCTCGGCAATTCAGGCTGTTGAAAGCACCTCAGAGGATGGGCAGACCATCATTGAGA
TTGATCCAGCCCCGGACCCAGAAGCTGAAGATACTGAGGGCAAAGCAGTCATCTTGGAGACAGAGCTGAG
GACTGAGGAGAAAGTTGTGGCTGAGATGGAAGAACACCAGCATCAAGTTCACAATGTGGAGATTGTGGTC
TTAGAGGATTAA

Translation (563 aa):
MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGIYEAGSENNTAVVAVETHTIHKIEEGI
DTGTIEANEDMEIAYPITCGESKAILLWKKFVCPGINVKCVKFNDQLISPKHFVHLAGKSTLKDWKRAIR
LGGIMLRKMMDSGQIDFYQHDKVCSNTCRSTKFDLLISSARAPVPGQQTSVVQTPTSADGSITQIAISEE
SMEEAGLEWNSALTAAVTMATEEGVKKDSEEISEDTLMFWKGIADVGLMEEVVCNIQKEIEELLRGVQQR
LIQAPFQVTDAAVLNNVAHTFGLMDTVKKVLDNRRNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKS
QTVQNVVLMPVSTPKPPKRPRLQRPASTTVLSPSPPVQQPQFTVISPITITPVGQSFSMGNIPVATLSQG
SSPVTVHTLPSGPQLFRYATVVSSAKSSSPDTVTIHPSSSLALLSSTAMQDGSTLGNMTTMVSPVELVAM
ESGLTSAIQAVESTSEDGQTIIEIDPAPDPEAEDTEGKAVILETELRTEEKVVAEMEEHQHQVHNVEIVV
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Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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