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Report for CCDS32804.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32804.1 Public Homo sapiens 18 TTC39C 24 110 108 CCDS HistoryNCBI Gene:125488Re-query CCDS DB by CCDS ID:32804.1Re-query CCDS DB by GeneID:125488See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32804.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304621.10 ENSP00000306598.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000304621.10Link to Ensembl Protein Viewer:ENSP00000306598.6Re-query CCDS DB by Nucleotide ID:ENST00000304621Re-query CCDS DB by Protein ID:ENSP00000306598
Original member Current member NCBI NM_153211.4 NP_694943.2 Accepted alive Link to Nucleotide Sequence:NM_153211.4Link to Protein Sequence:NP_694943.2Re-query CCDS DB by Nucleotide ID:NM_153211Re-query CCDS DB by Protein ID:NP_694943Link to BLAST:NP_694943.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694943.2 522 Q8N584-2 522 100% 0 0

Chromosomal Locations for CCDS 32804.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 24064156 24064188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24066012 24066140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24069157 24069271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24080585 24080939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24082913 24083081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24114554 24114647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24118125 24118232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24123834 24123943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24125427 24125550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24128886 24128983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24130313 24130417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24131882 24131920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24132485 24132574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGAGTTTTGGAGCCAGCTTTGTCAGTTTTTTGAATGCCATGATGACATTTGAGGAAGAAAAAATGCAGT
TGGCATGTGATGACTTAAAAACCACAGAAAAACTGTGTGAAAGTGAAGAGGCTGGAGTAATTGAAACAAT
CAAGAATAAAATTAAGAAGAACGTTGATGTCCGAAAATCCGCCCCCTCTATGGTTGATCGGCTTCAGAGG
CAGATAATCATAGCTGACTGCCAGGTTTACCTGGCTGTGCTTTCATTTGTAAAACAAGAATTGTCAGCTT
ATATCAAAGGTGGGTGGATCCTTAGGAAAGCCTGGAAGATTTACAATAAATGCTATCTGGACATCAATGC
CCTTCAGGAGCTGTATCAGAAGAAGCTAACTGAAGAGTCCTTGACTTCTGATGCTGCAAATGATAATCAC
ATTGTGGCTGAAGGGGTGTCTGAGGAGTCTCTGAACAGACTGAAAGGTGCTGTTAGCTTTGGATATGGCC
TTTTTCACCTTTGCATATCCATGGTGCCCCCAAACCTGCTCAAAATCATCAACCTGCTGGGTTTTCCTGG
AGACCGCCTACAGGGGCTTTCTTCACTGATGTATGCAAGCGAAAGTAAGGACATGAAGGCCCCTTTAGCT
ACATTAGCTCTGCTCTGGTATCATACTGTAGTCCGCCCGTTTTTTGCCTTGGATGGCAGTGATAACAAGG
CAGGCCTGGATGAAGCTAAGGAAATTCTCCTTAAAAAAGAAGCTGCTTATCCAAATTCTTCCCTCTTTAT
GTTTTTCAAGGGACGGATACAACGACTAGAGTGTCAAATCAACAGTGCCTTGACATCTTTCCACACTGCT
TTGGAACTTGCAGTAGACCAGAGAGAAATTCAACATGTCTGTCTGTATGAAATTGGTTGGTGCAGCATGA
TAGAGCTCAATTTCAAGGATGCATTTGATTCCTTTGAGAGGCTAAAAAATGAGTCCAGGTGGTCCCAGTG
CTATTATGCCTACTTGACTGCAGTTTGTCAGGGAGCCACTGGTGATGTGGATGGGGCACAGATTGTCTTT
AAAGAAGTTCAGAAACTCTTCAAAAGGAAAAACAATCAGATTGAACAGTTCTCGGTGAAAAAGGCAGAGC
GATTTCGGAAGCAAACCCCAACCAAAGCGCTCTGTGTGTTGGCGTCTATTGAAGTGTTGTACTTGTGGAA
AGCTCTTCCAAACTGTTCCTTCCCCAACCTGCAGAGGATGAGTCAAGCTTGCCATGAAGTGGATGACTCA
TCTGTTGTTGGATTAAAGTATTTGCTTCTTGGTGCCATACACAAATGTCTAGGAAACTCAGAAGATGCTG
TTCAGTACTTCCAGCGAGCTGTTAAAGATGAATTGTGTCGTCAGAATAACTTATATGTTCAGCCGTATGC
CTGTTATGAACTTGGCTGTCTTCTATTAGACAAACCAGAGACTGTAGGAAGAGGCAGAGCTCTACTTCTT
CAAGCAAAGGAGGATTTCTCTGGCTACGACTTTGAAAACAGATTGCATGTCCGCATCCATGCTGCTCTGG
CCTCTCTGAGGGAATTGGTTCCTCAGTGA

Translation (522 aa):
MSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRKSAPSMVDRLQR
QIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYLDINALQELYQKKLTEESLTSDAANDNH
IVAEGVSEESLNRLKGAVSFGYGLFHLCISMVPPNLLKIINLLGFPGDRLQGLSSLMYASESKDMKAPLA
TLALLWYHTVVRPFFALDGSDNKAGLDEAKEILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTA
LELAVDQREIQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDVDGAQIVF
KEVQKLFKRKNNQIEQFSVKKAERFRKQTPTKALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDDS
SVVGLKYLLLGAIHKCLGNSEDAVQYFQRAVKDELCRQNNLYVQPYACYELGCLLLDKPETVGRGRALLL
QAKEDFSGYDFENRLHVRIHAALASLRELVPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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