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Report for CCDS32808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32808.1 Public Homo sapiens 18 PSMA8 24 110 108 CCDS HistoryNCBI Gene:143471Re-query CCDS DB by CCDS ID:32808.1Re-query CCDS DB by GeneID:143471See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32808.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308268.10 ENSP00000311121.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000308268.10Link to Ensembl Protein Viewer:ENSP00000311121.6Re-query CCDS DB by Nucleotide ID:ENST00000308268Re-query CCDS DB by Protein ID:ENSP00000311121
Original member Current member NCBI NM_144662.3 NP_653263.2 Accepted alive Link to Nucleotide Sequence:NM_144662.3Link to Protein Sequence:NP_653263.2Re-query CCDS DB by Nucleotide ID:NM_144662Re-query CCDS DB by Protein ID:NP_653263Link to BLAST:NP_653263.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653263.2 256 Q8TAA3-1 256 100% 0 0

Chromosomal Locations for CCDS 32808.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 26133966 26134067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26144559 26144685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26151840 26151982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26158122 26158244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26178830 26178949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26179068 26179130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26192319 26192411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGGCGTCTCGATATGACAGGGCGATCACTGTCTTCTCCCCAGACGGACACCTTTTTCAAGTTGAATATG
CCCAGGAAGCGGTGAAGAAAGGATCCACCGCGGTCGGAATTCGAGGTACCAATATAGTTGTTCTTGGGGT
AGAAAAAAAATCTGTTGCCAAGCTTCAAGATGAAAGAACTGTGAGGAAAATTTGTGCCCTTGATGACCAT
GTCTGCATGGCTTTTGCAGTTTTGACAATTTTTATAGGACTTACTGCTGATGCTAGAGTAGTAATAAACA
GAGCCCGTGTGGAGTGCCAGAGCCATAAGCTTACGGTTGAGGACCCAGTCACTGTAGAATACATAACTCG
CTTCATAGCAACTTTAAAGCAGAAATATACCCAAAGCAATGGACGAAGACCTTTTGGTATTTCTGCCTTA
ATTGTAGGTTTTGATGATGATGGTATCTCAAGATTGTATCAGACAGATCCTTCTGGTACTTATCATGCTT
GGAAGGCAAATGCAATAGGCCGAAGTGCTAAAACTGTTCGAGAATTTCTAGAAAAGAATTACACAGAAGA
TGCCATAGCAAGTGACAGTGAAGCTATCAAGTTAGCAATAAAAGCTTTGCTAGAAGTTGTCCAGTCTGGT
GGAAAAAACATTGAACTTGCTATAATAAGAAGAAATCAACCTTTGAAGATGTTTAGTGCAAAAGAAGTTG
AATTATATGTAACTGAAATAGAAAAGGAAAAGGAAGAAGCAGAGAAGAAAAAATCAAAGAAATCTGTCTA
A

Translation (256 aa):
MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDH
VCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISAL
IVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQSG
GKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKEEAEKKKSKKSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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