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Report for CCDS32812.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32812.3 Public Homo sapiens 18 SLC25A52 24 110 108 CCDS HistoryNCBI Gene:147407Re-query CCDS DB by CCDS ID:32812.3Re-query CCDS DB by GeneID:147407See the combined annotation on chromosome 18 in Sequence Viewer

Public Note for CCDS 32812.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data and by conservation in primates.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 32812.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269205.7 ENSP00000372612.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269205.7Link to Ensembl Protein Viewer:ENSP00000372612.4Re-query CCDS DB by Nucleotide ID:ENST00000269205Re-query CCDS DB by Protein ID:ENSP00000372612
Original member Current member NCBI NM_001034172.4 NP_001029344.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001034172.4Link to Protein Sequence:NP_001029344.4Re-query CCDS DB by Nucleotide ID:NM_001034172Re-query CCDS DB by Protein ID:NP_001029344Link to BLAST:NP_001029344.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029344.4 297 Q3SY17 297 100% 0 0

Chromosomal Locations for CCDS 32812.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 31759768 31760661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGATAGATTCAGAAGCTCATGAAAAGAGGCCACCAATACTTACATCTTCAAAACAAGATATATCACCTC
ATATTACAAATGTTGGTGAAATGAAGCATTACTTGTGTGGCTGCTGTGCAGCCTTCAACAACGTCGCAAT
CACATATCCCATTCAGAAGGTCCTCTTTCGGCAACAGCTGTATGGCATCAAAACCCGGGATGCAGTACTT
CAGTTGAGAAGGGATGGATTTCGAAATTTGTATCGTGGAATCCTTCCCCCATTGATGCAGAAGACAACTA
CGCTTGCACTTATGTTTGGTCTGTATGAGGATTTATCCTGCCTTCTCCGGAAGCATGTCCGTGCTCCAGA
GTTTGCAACCCATGGCGTGGCGGCAGTGCTTGCAGGGACAGCAGAAGCAATTTTCACTCCACTGGAAAGA
GTTCAGACATTGCTTCAAAACCACAAGCATCATGACAAATTTACCAACACTTATCAGGCTTTCAAGGCAC
TGAAATGTCATGGAATTGGAGAGTATTATCGAGGCTTGGTGCCCATTCTTTTCCGGAATGGACTCAGCAA
TGTCTTGTTTTTCGGCCTTCGAGGTCCCATTAAGGAGCATCTGCCTACCGCAACGACTCACAGTGCTCAT
TTGGTCAATGATTTTATCGGTGGAGGTCTATTGGGTGCCATGTTGGGATTCTTGTGTTTTCCAATTAATG
TTGTAAAAACTCGCCTACAGTCTCAGATTGGTGGGGAATTTCAGTCTTTCCCCAAGGTTTTCCAAAAAAT
CTGGCTGGAACGGGACAGAAAACTGATAAATCTTTTCAGAGGTGCCCATCTGAATTACCATCGGTCCCTC
ATCTCTTGGGGCATAATCAATGCAACTTATGAGTTCTTGTTAAAATTTATATGA

Translation (297 aa):
MIDSEAHEKRPPILTSSKQDISPHITNVGEMKHYLCGCCAAFNNVAITYPIQKVLFRQQLYGIKTRDAVL
QLRRDGFRNLYRGILPPLMQKTTTLALMFGLYEDLSCLLRKHVRAPEFATHGVAAVLAGTAEAIFTPLER
VQTLLQNHKHHDKFTNTYQAFKALKCHGIGEYYRGLVPILFRNGLSNVLFFGLRGPIKEHLPTATTHSAH
LVNDFIGGGLLGAMLGFLCFPINVVKTRLQSQIGGEFQSFPKVFQKIWLERDRKLINLFRGAHLNYHRSL
ISWGIINATYEFLLKFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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