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Report for CCDS32954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32954.1 Public Homo sapiens 19 MAP1S 24 110 108 CCDS HistoryNCBI Gene:55201Re-query CCDS DB by CCDS ID:32954.1Re-query CCDS DB by GeneID:55201See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32954.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324096.9 ENSP00000325313.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324096.9Link to Ensembl Protein Viewer:ENSP00000325313.3Re-query CCDS DB by Nucleotide ID:ENST00000324096Re-query CCDS DB by Protein ID:ENSP00000325313
Original member Current member NCBI NM_018174.6 NP_060644.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018174.6Link to Protein Sequence:NP_060644.4Re-query CCDS DB by Nucleotide ID:NM_018174Re-query CCDS DB by Protein ID:NP_060644Link to BLAST:NP_060644.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060644.4 1059 Q66K74-1 1059 100% 0 0

Chromosomal Locations for CCDS 32954.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17719503 17719620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17720936 17721037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17724126 17724208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17725049 17725189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17725829 17728172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17733193 17733428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17734273 17734428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3180 nt):
ATGGCGGCGGTGGCTGGATCTGGGGCTGCCGCGGCTCCGAGCTCACTGCTCCTCGTGGTGGGCAGCGAGT
TCGGGAGCCCGGGGCTCCTCACCTACGTCCTGGAGGAGCTCGAAAGAGGCATCCGGTCTTGGGATGTCGA
TCCTGGCGTCTGCAACCTTGATGAACAGCTCAAGGTCTTTGTGTCCCGACACTCTGCCACCTTCTCCAGC
ATTGTGAAAGGCCAGCGGAGCCTGCACCACCGTGGAGACAACCTGGAGACCCTGGTCCTCCTGAACCCAT
CAGACAAGTCCCTGTATGATGAGCTCCGGAACCTTCTGTTGGACCCTGCCTCTCACAAGCTACTGGTGTT
GGCTGGGCCCTGCCTGGAGGAGACGGGGGAGCTGCTGCTACAGACAGGGGGCTTCTCGCCTCACCACTTC
CTCCAGGTCCTGAAGGACAGAGAGATCCGGGACATCCTGGCCACCACGCCCCCACCTGTGCAGCCGCCCA
TACTCACCATCACCTGCCCCACCTTCGGTGACTGGGCTCAGCTGGCACCCGCTGTGCCTGGCCTTCAGGG
GGCGCTCCGGCTCCAGCTGCGGCTGAACCCCCCGGCGCAGCTGCCCAACTCTGAGGGCCTGTGCGAATTC
CTGGAGTACGTGGCTGAGTCTCTGGAGCCACCGTCCCCCTTCGAGCTGCTGGAGCCCCCGACCTCCGGGG
GCTTCCTCAGGCTGGGCCGGCCCTGCTGCTACATCTTCCCTGGAGGCCTCGGGGATGCCGCCTTCTTCGC
CGTCAATGGCTTCACTGTGCTGGTCAACGGTGGCTCAAACCCCAAGTCCAGTTTCTGGAAGCTGGTGCGG
CACCTGGACCGCGTGGATGCCGTGCTGGTGACCCACCCTGGCGCCGACAGCCTCCCCGGCCTCAACAGCC
TGCTGCGGCGCAAACTGGCGGAGCGCTCCGAGGTGGCTGCTGGTGGGGGCTCCTGGGACGACAGGCTGCG
CAGGCTCATCTCCCCCAACCTGGGGGTCGTGTTCTTCAACGCCTGCGAGGCCGCGTCGCGGCTGGCGCGC
GGCGAGGATGAGGCGGAGCTGGCGCTGAGCCTCCTGGCGCAGCTGGGCATCACGCCTCTGCCACTCAGCC
GCGGCCCCGTGCCAGCCAAACCCACCGTGCTCTTCGAGAAGATGGGCGTGGGCCGGCTGGACATGTATGT
GCTGCACCCGCCCTCCGCCGGCGCCGAGCGCACGCTGGCCTCTGTGTGCGCCCTGCTGGTGTGGCACCCC
GCCGGCCCCGGCGAGAAGGTGGTGCGCGTGCTGTTCCCCGGTTGCACCCCGCCCGCCTGCCTCCTGGACG
GCCTGGTCCGCCTGCAGCACTTGAGGTTCCTGCGAGAGCCCGTGGTGACGCCCCAGGACCTGGAGGGGCC
GGGGCGAGCCGAGAGCAAAGAGAGCGTGGGCTCCCGGGACAGCTCGAAGAGAGAGGGCCTCCTGGCCACC
CACCCTAGACCTGGCCAGGAGCGCCCTGGGGTGGCCCGCAAGGAGCCAGCACGGGCTGAGGCCCCACGCA
AGACTGAGAAAGAAGCCAAGACCCCCCGGGAGTTGAAGAAAGACCCCAAACCGAGTGTCTCCCGGACCCA
GCCGCGGGAGGTGCGCCGGGCAGCCTCTTCTGTGCCCAACCTCAAGAAGACGAATGCCCAGGCGGCACCC
AAGCCCCGCAAAGCGCCCAGCACGTCCCACTCTGGCTTCCCGCCGGTGGCAAATGGACCCCGCAGCCCGC
CCAGCCTCCGATGTGGAGAAGCCAGCCCCCCCAGTGCAGCCTGCGGCTCTCCGGCCTCCCAGCTGGTGGC
CACGCCCAGCCTGGAGCTGGGGCCGATCCCAGCCGGGGAGGAGAAGGCACTGGAGCTGCCTTTGGCCGCC
AGCTCAATCCCAAGGCCACGCACACCCTCCCCTGAGTCCCACCGGAGCCCCGCAGAGGGCAGCGAGCGGC
TGTCGCTGAGCCCACTGCGGGGCGGGGAGGCCGGGCCAGACGCCTCACCCACAGTGACCACACCCACGGT
GACCACGCCCTCACTACCCGCAGAGGTGGGCTCCCCGCACTCGACCGAGGTGGACGAGTCCCTGTCGGTG
TCCTTTGAGCAGGTGCTGCCGCCATCCGCCCCCACCAGTGAGGCTGGGCTGAGCCTCCCGCTGCGTGGCC
CCCGGGCGCGGCGCTCGGCTTCCCCACACGATGTGGACCTGTGCCTGGTGTCACCCTGTGAATTTGAGCA
TCGCAAGGCGGTGCCAATGGCACCGGCACCTGCGTCCCCCGGCAGCTCGAATGACAGCAGTGCCCGGTCA
CAGGAACGGGCAGGTGGGCTGGGGGCCGAGGAGACGCCACCCACATCGGTCAGCGAGTCCCTGCCCACCC
TGTCTGACTCGGATCCCGTGCCCCTGGCCCCCGGTGCGGCAGACTCAGACGAAGACACAGAGGGCTTTGG
AGTCCCTCGCCACGACCCTTTGCCTGACCCCCTCAAGGTCCCCCCACCACTGCCTGACCCATCCAGCATC
TGCATGGTGGACCCCGAGATGCTGCCCCCCAAGACAGCACGGCAAACGGAGAACGTCAGCCGCACCCGGA
AGCCCCTGGCCCGCCCCAACTCACGCGCTGCCGCCCCCAAAGCCACTCCAGTGGCTGCTGCCAAAACCAA
GGGGCTTGCTGGTGGGGACCGTGCCAGCCGACCACTCAGTGCCCGGAGTGAGCCCAGTGAGAAGGGAGGC
CGGGCACCCCTGTCCAGAAAGTCCTCAACCCCCAAGACTGCCACTCGAGGCCCGTCGGGGTCAGCCAGCA
GCCGGCCCGGGGTGTCAGCCACCCCACCCAAGTCCCCGGTCTACCTGGACCTGGCCTACCTGCCCAGCGG
GAGCAGCGCCCACCTGGTGGATGAGGAGTTCTTCCAGCGCGTGCGCGCGCTCTGCTACGTCATCAGTGGC
CAGGACCAGCGCAAGGAGGAAGGCATGCGGGCCGTCCTGGACGCGCTACTGGCCAGCAAGCAGCATTGGG
ACCGTGACCTGCAGGTGACCCTGATCCCCACTTTCGACTCGGTGGCCATGCATACGTGGTACGCAGAGAC
GCACGCCCGGCACCAGGCGCTGGGCATCACGGTGTTGGGCAGCAACAGCATGGTGTCCATGCAGGATGAC
GCCTTCCCGGCCTGCAAGGTGGAGTTCTAG

Translation (1059 aa):
MAAVAGSGAAAAPSSLLLVVGSEFGSPGLLTYVLEELERGIRSWDVDPGVCNLDEQLKVFVSRHSATFSS
IVKGQRSLHHRGDNLETLVLLNPSDKSLYDELRNLLLDPASHKLLVLAGPCLEETGELLLQTGGFSPHHF
LQVLKDREIRDILATTPPPVQPPILTITCPTFGDWAQLAPAVPGLQGALRLQLRLNPPAQLPNSEGLCEF
LEYVAESLEPPSPFELLEPPTSGGFLRLGRPCCYIFPGGLGDAAFFAVNGFTVLVNGGSNPKSSFWKLVR
HLDRVDAVLVTHPGADSLPGLNSLLRRKLAERSEVAAGGGSWDDRLRRLISPNLGVVFFNACEAASRLAR
GEDEAELALSLLAQLGITPLPLSRGPVPAKPTVLFEKMGVGRLDMYVLHPPSAGAERTLASVCALLVWHP
AGPGEKVVRVLFPGCTPPACLLDGLVRLQHLRFLREPVVTPQDLEGPGRAESKESVGSRDSSKREGLLAT
HPRPGQERPGVARKEPARAEAPRKTEKEAKTPRELKKDPKPSVSRTQPREVRRAASSVPNLKKTNAQAAP
KPRKAPSTSHSGFPPVANGPRSPPSLRCGEASPPSAACGSPASQLVATPSLELGPIPAGEEKALELPLAA
SSIPRPRTPSPESHRSPAEGSERLSLSPLRGGEAGPDASPTVTTPTVTTPSLPAEVGSPHSTEVDESLSV
SFEQVLPPSAPTSEAGLSLPLRGPRARRSASPHDVDLCLVSPCEFEHRKAVPMAPAPASPGSSNDSSARS
QERAGGLGAEETPPTSVSESLPTLSDSDPVPLAPGAADSDEDTEGFGVPRHDPLPDPLKVPPPLPDPSSI
CMVDPEMLPPKTARQTENVSRTRKPLARPNSRAAAPKATPVAAAKTKGLAGGDRASRPLSARSEPSEKGG
RAPLSRKSSTPKTATRGPSGSASSRPGVSATPPKSPVYLDLAYLPSGSSAHLVDEEFFQRVRALCYVISG
QDQRKEEGMRAVLDALLASKQHWDRDLQVTLIPTFDSVAMHTWYAETHARHQALGITVLGSNSMVSMQDD
AFPACKVEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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