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Report for CCDS33053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33053.1 Public Homo sapiens 19 SNRPD2 24 110 108 CCDS HistoryNCBI Gene:6633Re-query CCDS DB by CCDS ID:33053.1Re-query CCDS DB by GeneID:6633See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33053.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342669.8 ENSP00000342374.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342669.8Link to Ensembl Protein Viewer:ENSP00000342374.2Re-query CCDS DB by Nucleotide ID:ENST00000342669Re-query CCDS DB by Protein ID:ENSP00000342374
Original member Current member EBI ENST00000588301.5 ENSP00000465216.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588301.5Link to Ensembl Protein Viewer:ENSP00000465216.1Re-query CCDS DB by Nucleotide ID:ENST00000588301Re-query CCDS DB by Protein ID:ENSP00000465216
Original member Current member NCBI NM_001384647.1 NP_001371576.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384647.1Link to Protein Sequence:NP_001371576.1Re-query CCDS DB by Nucleotide ID:NM_001384647Re-query CCDS DB by Protein ID:NP_001371576Link to BLAST:NP_001371576.1
Original member Current member NCBI NM_004597.6 NP_004588.1 Accepted alive Link to Nucleotide Sequence:NM_004597.6Link to Protein Sequence:NP_004588.1Re-query CCDS DB by Nucleotide ID:NM_004597Re-query CCDS DB by Protein ID:NP_004588Link to BLAST:NP_004588.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371576.1 118 P62316-1 118 100% 0 0
NP_004588.1 118 P62316-1 118 100% 0 0

Chromosomal Locations for CCDS 33053.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45687553 45687727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45688387 45688566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45691887 45691888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGAGCCTCCTCAACAAGCCCAAGAGTGAGATGACCCCAGAGGAGCTGCAGAAGCGAGAGGAGGAGGAAT
TTAACACCGGTCCACTCTCTGTGCTCACACAGTCAGTCAAGAACAATACCCAAGTGCTCATCAACTGCCG
CAACAATAAGAAACTCCTGGGCCGCGTGAAGGCCTTCGATAGGCACTGCAACATGGTGCTGGAGAACGTG
AAGGAGATGTGGACTGAGGTACCCAAGAGTGGCAAGGGCAAGAAGAAGTCCAAGCCAGTCAACAAAGACC
GCTACATCTCCAAGATGTTCCTGCGCGGGGACTCAGTCATCGTGGTCCTGCGGAACCCGCTCATCGCCGG
CAAGTAG

Translation (118 aa):
MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV
KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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