NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33110.1 Public Homo sapiens 19 PTPRH 24 110 108 CCDS HistoryNCBI Gene:5794Re-query CCDS DB by CCDS ID:33110.1Re-query CCDS DB by GeneID:5794See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33110.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376350.8 ENSP00000365528.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376350.8Link to Ensembl Protein Viewer:ENSP00000365528.2Re-query CCDS DB by Nucleotide ID:ENST00000376350Re-query CCDS DB by Protein ID:ENSP00000365528
Original member Current member NCBI NM_002842.5 NP_002833.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002842.5Link to Protein Sequence:NP_002833.4Re-query CCDS DB by Nucleotide ID:NM_002842Re-query CCDS DB by Protein ID:NP_002833Link to BLAST:NP_002833.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002833.4 1115 Q9HD43-1 1115 100% 0 0

Chromosomal Locations for CCDS 33110.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55181754 55181903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55182016 55182151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55185502 55185662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55185862 55185984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55186225 55186359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55186464 55186540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55187513 55187603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55188078 55188168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55191501 55191548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55191663 55191741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55196522 55196788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55197117 55197416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55198643 55198912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55200236 55200502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55202056 55202322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55203782 55204048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55205326 55205592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55206689 55206955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55207166 55207199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55209383 55209433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3348 nt):
ATGGCTGGGGCTGGCGGGGGCCTCGGGGTCTGGGGGAACCTGGTGCTGCTGGGCCTGTGCAGCTGGACAG
GGGCCAGGGCGCCTGCCCCCAACCCAGGGAGGAACCTGACAGTGGAGACTCAGACCACCAGCTCCATCTC
CCTGAGCTGGGAGGTCCCCGATGGCCTAGACTCACAGAACTCCAACTACTGGGTTCAGTGTACTGGAGAC
GGCGGCACAACAGAGACTCGAAACACAACAGCCACCAACGTCACCGTGGATGGCCTTGGACCCGGGTCAT
TGTATACGTGTTCTGTGTGGGTGGAGAAAGACGGAGTAAATAGCTCTGTGGGGACTGTCACTACTGCCAC
AGCTCCCAACCCAGTGAGGAACCTGAGAGTGGAGGCTCAGACCAACAGCTCCATCGCCCTGACCTGGGAG
GTCCCCGACGGCCCAGACCCACAGAACTCCACCTACGGGGTTGAGTACACTGGAGATGGTGGCAGAGCAG
GGACTCGAAGCACAGCACACACTAACATCACCGTGGATGGACTTGAACCCGGGTGTTTGTATGCGTTTTC
CATGTGGGTGGGAAAGAATGGAATCAACAGCTCCCGGGAGACTCGAAATGCCACCACAGCTCACAACCCA
GTGAGGAACCTGAGAGTGGAGGCTCAGACCACCAGCTCCATCTCCCTGAGCTGGGAGGTCCCCGATGGCA
CAGACCCACAGAACTCGACCTACTGCGTTCAGTGCACTGGAGATGGTGGCAGAACAGAGACTCGAAACAC
AACAGACACCAGAGTCACCGTGGATGGCCTTGGACCCGGGTCATTGTATACGTGTTCTGTGTGGGTGGAG
AAAGACGGAGTAAATAGCTCTGTGGAGATTGTCACTAGTGCCACAGCTCCCAACCCAGTGAGAAACCTGA
CAGTGGAGGCTCAGACCAACAGCTCCATCGCCCTGACCTGGGAGGTCCCCGATGGCCCAGACCCACAGAA
CTCCACCTACGGGGTTGAGTACACTGGAGATGGTGGCAGAGCAGGGACTCGAAGCACAGCACACACCAAC
ATCACCGTGGATAGACTTGAACCCGGGTGTTTGTATGTGTTTTCCGTGTGGGTGGGGAAGAATGGAATCA
ACAGCTCCCGGGAGACTCGAAATGCCACCACAGCCCCCAACCCAGTGAGAAACCTCCATATGGAGACTCA
GACCAACAGCTCCATCGCCCTATGCTGGGAAGTCCCCGATGGCCCATACCCTCAGGACTACACCTACTGG
GTAGAGTACACTGGAGACGGTGGTGGCACAGAGACCCGAAACACAACAAATACCAGTGTGACAGCTGAGA
GACTTGAGCCCGGAACCTTGTACACATTCTCTGTATGGGCAGAAAAAAATGGAGCACGTGGCTCCAGGCA
GAATGTCAGCATCTCCACAGTCCCCAACGCAGTGACAAGCCTCAGCAAGCAGGACTGGACCAACAGCACC
ATTGCTTTGCGCTGGACAGCTCCCCAGGGCCCAGGCCAGTCTTCCTACAGCTACTGGGTCTCATGGGTCA
GGGAAGGCATGACTGACCCCAGGACCCAAAGCACCTCAGGTACTGACATCACCCTAAAGGAACTGGAAGC
TGGCAGCCTGTACCACCTCACCGTCTGGGCCGAGAGGAATGAGGTCAGAGGCTATAACAGCACCCTCACT
GCAGCCACTGCTCCCAATGAGGTCACAGATCTCCAGAATGAAACTCAGACTAAGAACTCAGTCATGCTGT
GGTGGAAGGCCCCTGGAGACCCCCACTCTCAGTTGTACGTATACTGGGTCCAGTGGGCCAGCAAGGGACA
TCCCCGGAGGGGGCAAGATCCCCAAGCGAATTGGGTCAACCAGACCAGCAGGACCAATGAGACGTGGTAC
AAAGTGGAGGCCCTGGAACCCGGGACGTTGTACAATTTCACCGTGTGGGCAGAGAGGAATGACGTAGCCA
GTTCCACGCAGAGCCTCTGTGCGTCCACATACCCAGACACAGTCACCATCACTTCCTGTGTCAGCACCTC
AGCGGGCTATGGAGTCAACTTGATCTGGTCCTGCCCCCAGGGAGGCTACGAGGCCTTTGAGTTGGAGGTG
GGAGGACAGCGGGGCTCCCAGGACAGATCTTCATGTGGGGAGGCTGTGTCTGTGTTGGGTCTCGGGCCGG
CTCGGTCCTACCCAGCCACCATCACGACCATCTGGGACGGAATGAAGGTCGTGTCTCACTCTGTGGTCTG
CCACACCGAGAGTGCAGGGGTCATTGCCGGAGCCTTTGTGGGCATCCTCCTGTTTCTCATCCTCGTGGGC
CTGCTGATTTTCTTCCTGAAGAGGAGGAATAAGAAGAAGCAGCAGAAACCAGAACTCAGGGATCTGGTCT
TTAGCTCCCCAGGGGACATCCCAGCTGAAGACTTCGCTGACCACGTCAGGAAGAATGAGAGGGACAGCAA
CTGTGGTTTTGCAGACGAGTACCAGCAACTCTCCCTGGTGGGCCACAGCCAGTCTCAGATGGTGGCTTCG
GCTTCAGAGAACAACGCCAAGAACCGCTACAGAAATGTGCTGCCCTATGACTGGTCCCGGGTGCCCCTGA
AGCCCATCCATGAGGAGCCAGGCTCTGACTACATCAATGCCAGCTTCATGCCCGGTCTCTGGAGCCCCCA
GGAGTTCATTGCAACCCAGGGTCCCCTGCCACAGACAGTGGGTGACTTCTGGCGCCTGGTGTGGGAACAG
CAGAGCCACACCCTGGTCATGCTGACCAACTGCATGGAGGCCGGCCGGGTGAAGTGTGAGCATTACTGGC
CTCTGGACTCGCAGCCCTGCACCCATGGGCACCTGCGGGTAACCCTGGTAGGTGAGGAAGTGATGGAGAA
CTGGACGGTGCGGGAACTGCTGCTCCTCCAGGTGGAGGAGCAGAAGACACTGTCTGTGCGCCAATTCCAC
TACCAGGCCTGGCCGGATCACGGCGTTCCCTCCTCCCCAGACACCTTGCTGGCTTTCTGGAGGATGCTTC
GGCAGTGGCTGGATCAGACCATGGAGGGAGGCCCACCCATTGTGCACTGCAGTGCTGGCGTGGGTCGCAC
AGGAACCCTCATTGCCCTGGACGTCCTGCTCCGGCAGCTGCAGTCCGAGGGTCTCCTTGGGCCCTTCAGC
TTTGTAAGGAAGATGAGAGAGAGTCGGCCGTTGATGGTGCAGACTGAGGCTCAGTACGTATTCCTGCATC
AGTGCATCCTGCGGTTCCTCCAACAGTCAGCCCAGGCCCCAGCCGAGAAGGAAGTCCCGTATGAGGATGT
CGAAAACCTCATCTACGAGAACGTGGCCGCCATCCAGGCCCACAAGTTGGAGGTCTAA

Translation (1115 aa):
MAGAGGGLGVWGNLVLLGLCSWTGARAPAPNPGRNLTVETQTTSSISLSWEVPDGLDSQNSNYWVQCTGD
GGTTETRNTTATNVTVDGLGPGSLYTCSVWVEKDGVNSSVGTVTTATAPNPVRNLRVEAQTNSSIALTWE
VPDGPDPQNSTYGVEYTGDGGRAGTRSTAHTNITVDGLEPGCLYAFSMWVGKNGINSSRETRNATTAHNP
VRNLRVEAQTTSSISLSWEVPDGTDPQNSTYCVQCTGDGGRTETRNTTDTRVTVDGLGPGSLYTCSVWVE
KDGVNSSVEIVTSATAPNPVRNLTVEAQTNSSIALTWEVPDGPDPQNSTYGVEYTGDGGRAGTRSTAHTN
ITVDRLEPGCLYVFSVWVGKNGINSSRETRNATTAPNPVRNLHMETQTNSSIALCWEVPDGPYPQDYTYW
VEYTGDGGGTETRNTTNTSVTAERLEPGTLYTFSVWAEKNGARGSRQNVSISTVPNAVTSLSKQDWTNST
IALRWTAPQGPGQSSYSYWVSWVREGMTDPRTQSTSGTDITLKELEAGSLYHLTVWAERNEVRGYNSTLT
AATAPNEVTDLQNETQTKNSVMLWWKAPGDPHSQLYVYWVQWASKGHPRRGQDPQANWVNQTSRTNETWY
KVEALEPGTLYNFTVWAERNDVASSTQSLCASTYPDTVTITSCVSTSAGYGVNLIWSCPQGGYEAFELEV
GGQRGSQDRSSCGEAVSVLGLGPARSYPATITTIWDGMKVVSHSVVCHTESAGVIAGAFVGILLFLILVG
LLIFFLKRRNKKKQQKPELRDLVFSSPGDIPAEDFADHVRKNERDSNCGFADEYQQLSLVGHSQSQMVAS
ASENNAKNRYRNVLPYDWSRVPLKPIHEEPGSDYINASFMPGLWSPQEFIATQGPLPQTVGDFWRLVWEQ
QSHTLVMLTNCMEAGRVKCEHYWPLDSQPCTHGHLRVTLVGEEVMENWTVRELLLLQVEEQKTLSVRQFH
YQAWPDHGVPSSPDTLLAFWRMLRQWLDQTMEGGPPIVHCSAGVGRTGTLIALDVLLRQLQSEGLLGPFS
FVRKMRESRPLMVQTEAQYVFLHQCILRFLQQSAQAPAEKEVPYEDVENLIYENVAAIQAHKLEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH