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Report for CCDS3318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3318.1 Public Homo sapiens 3 WDR53 24 110 108 CCDS HistoryNCBI Gene:348793Re-query CCDS DB by CCDS ID:3318.1Re-query CCDS DB by GeneID:348793See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3318.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332629.7 ENSP00000328079.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332629.7Link to Ensembl Protein Viewer:ENSP00000328079.5Re-query CCDS DB by Nucleotide ID:ENST00000332629Re-query CCDS DB by Protein ID:ENSP00000328079
Original member Current member NCBI NM_001345906.2 NP_001332835.1 Accepted alive Link to Nucleotide Sequence:NM_001345906.2Link to Protein Sequence:NP_001332835.1Re-query CCDS DB by Nucleotide ID:NM_001345906Re-query CCDS DB by Protein ID:NP_001332835Link to BLAST:NP_001332835.1
Original member Current member NCBI NM_001345907.2 NP_001332836.1 Accepted alive Link to Nucleotide Sequence:NM_001345907.2Link to Protein Sequence:NP_001332836.1Re-query CCDS DB by Nucleotide ID:NM_001345907Re-query CCDS DB by Protein ID:NP_001332836Link to BLAST:NP_001332836.1
Original member Current member NCBI NM_001345908.2 NP_001332837.1 Accepted alive Link to Nucleotide Sequence:NM_001345908.2Link to Protein Sequence:NP_001332837.1Re-query CCDS DB by Nucleotide ID:NM_001345908Re-query CCDS DB by Protein ID:NP_001332837Link to BLAST:NP_001332837.1
Original member Current member NCBI NM_001345909.2 NP_001332838.1 Accepted alive Link to Nucleotide Sequence:NM_001345909.2Link to Protein Sequence:NP_001332838.1Re-query CCDS DB by Nucleotide ID:NM_001345909Re-query CCDS DB by Protein ID:NP_001332838Link to BLAST:NP_001332838.1
Original member Current member NCBI NM_001345910.2 NP_001332839.1 Accepted alive Link to Nucleotide Sequence:NM_001345910.2Link to Protein Sequence:NP_001332839.1Re-query CCDS DB by Nucleotide ID:NM_001345910Re-query CCDS DB by Protein ID:NP_001332839Link to BLAST:NP_001332839.1
Original member Current member NCBI NM_182627.3 NP_872433.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182627.3Link to Protein Sequence:NP_872433.1Re-query CCDS DB by Nucleotide ID:NM_182627Re-query CCDS DB by Protein ID:NP_872433Link to BLAST:NP_872433.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001332835.1 358 Q7Z5U6 358 100% 0 0
NP_001332836.1 358 Q7Z5U6 358 100% 0 0
NP_001332837.1 358 Q7Z5U6 358 100% 0 0
NP_001332838.1 358 Q7Z5U6 358 100% 0 0
NP_001332839.1 358 Q7Z5U6 358 100% 0 0
NP_872433.1 358 Q7Z5U6 358 100% 0 0

Chromosomal Locations for CCDS 3318.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 196554211 196554807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196560996 196561475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGCAGTCAAGTGGACGGGTGGGCATTCTTCTCCTGTCCTCTGCCTGAATGCAAGTAAAGAAGGGCTGC
TGGCTTCTGGAGCAGAGGGCGGAGATCTCACGGCTTGGGGTGAAGATGGAACTCCATTAGGACACACGCG
GTTCCAAGGGGCTGATGATGTTACCAGTGTCTTATTTTCTCCCTCCTGTCCCACCAAGCTCTATGCCTCA
CATGGAGAAACCATTAGTGTACTGGATGTCAGGTCCCTCAAAGATTCCTTGGACCATTTTCATGTGAATG
AAGAAGAAATCAATTGTCTTTCATTGAATCAAACGGAAAACCTGCTGGCTTCTGCTGACGACTCTGGGGC
AATCAAAATCCTAGACTTGGAAAACAAGAAAGTTATCAGATCCTTGAAGAGACATTCCAATATCTGCTCC
TCAGTGGCTTTTCGGCCTCAGAGGCCTCAGAGCCTGGTGTCATGTGGACTGGATATGCAGGTGATGCTGT
GGAGTCTTCAAAAAGCCCGACCACTCTGGATTACAAATTTACAGGAGGATGAAACAGAAGAAATGGAAGG
CCCACAGTCACCTGGTCAGCTCTTAAACCCTGCCCTAGCCCATTCTATCTCTGTGGCTTCGTGTGGTAAT
ATTTTTAGTTGTGGTGCAGAAGATGGTAAGGTTCGAATCTTTCGGGTGATGGGAGTTAAGTGTGAACAGG
AACTGGGATTTAAGGGCCACACTTCAGGGGTATCCCAGGTCTGCTTTCTCCCAGAATCCTATTTGCTGCT
TACTGGAGGGAATGATGGGAAGATCACGTTGTGGGATGCAAACAGTGAAGTTGAGAAAAAACAGAAGAGT
CCCACAAAACGTACCCACAGGAAGAAACCTAAAAGAGGAACTTGCACCAAGCAGGGTGGAAATACTAACG
CTTCAGTAACAGATGAGGAAGAACATGGCAACATTTTACCAAAGCTAAATATTGAACATGGAGAAAAAGT
GAACTGGCTCTTGGGTACAAAAATAAAGGGACACCAAAATATATTAGTAGCTGATCAAACTAGTTGTATA
TCTGTATACCCCTTAAATGAATTTTAA

Translation (358 aa):
MAVKWTGGHSSPVLCLNASKEGLLASGAEGGDLTAWGEDGTPLGHTRFQGADDVTSVLFSPSCPTKLYAS
HGETISVLDVRSLKDSLDHFHVNEEEINCLSLNQTENLLASADDSGAIKILDLENKKVIRSLKRHSNICS
SVAFRPQRPQSLVSCGLDMQVMLWSLQKARPLWITNLQEDETEEMEGPQSPGQLLNPALAHSISVASCGN
IFSCGAEDGKVRIFRVMGVKCEQELGFKGHTSGVSQVCFLPESYLLLTGGNDGKITLWDANSEVEKKQKS
PTKRTHRKKPKRGTCTKQGGNTNASVTDEEEHGNILPKLNIEHGEKVNWLLGTKIKGHQNILVADQTSCI
SVYPLNEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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