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Report for CCDS33238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33238.1 Public Homo sapiens 2 PLGLB1 24 110 108 CCDS HistoryNCBI Gene:5343Re-query CCDS DB by CCDS ID:33238.1Re-query CCDS DB by GeneID:5343See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33238.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355705.4 ENSP00000347933.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355705.4Link to Ensembl Protein Viewer:ENSP00000347933.3Re-query CCDS DB by Nucleotide ID:ENST00000355705Re-query CCDS DB by Protein ID:ENSP00000347933
Original member Current member EBI ENST00000409310.6 ENSP00000386505.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409310.6Link to Ensembl Protein Viewer:ENSP00000386505.2Re-query CCDS DB by Nucleotide ID:ENST00000409310Re-query CCDS DB by Protein ID:ENSP00000386505
Original member Current member EBI ENST00000409801.5 ENSP00000386975.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409801.5Link to Ensembl Protein Viewer:ENSP00000386975.1Re-query CCDS DB by Nucleotide ID:ENST00000409801Re-query CCDS DB by Protein ID:ENSP00000386975
Original member Current member NCBI NM_001032392.4 NP_001027564.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001032392.4Link to Protein Sequence:NP_001027564.1Re-query CCDS DB by Nucleotide ID:NM_001032392Re-query CCDS DB by Protein ID:NP_001027564Link to BLAST:NP_001027564.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001027564.1 96 Q02325 96 100% 0 0

Chromosomal Locations for CCDS 33238.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87016303 87016408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 87017553 87017688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 87021735 87021783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (291 nt):
ATGGAACATAAGGAAGTGGTTCTTCTACTTCTTTTATTTCTGAAATCAGGTCAAGGAGAGCCCCTGGATG
ACTATGTGAATACCCAGGGGCCTTCACTGTTCAGTGTCACTAAGAAGCAGCTGGGGGCAGGAAGCAGAGA
AGAATGTGCAGCAAAATGTGAAGAGGACAAAGAATTCACCTGCAGGGCATTCCAATATCACAGTAAAGAG
CAACAATGTGTGATAATGGCTGAAAACAGGAAGTCCTCCATAATCATTAGGATGAGAGATGCAGTTTTAT
TTGAAAAGTAA

Translation (96 aa):
MEHKEVVLLLLLFLKSGQGEPLDDYVNTQGPSLFSVTKKQLGAGSREECAAKCEEDKEFTCRAFQYHSKE
QQCVIMAENRKSSIIIRMRDAVLFEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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