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Report for CCDS3359.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3359.2 Public Homo sapiens 4 NAT8L 24 110 108 CCDS HistoryNCBI Gene:339983Re-query CCDS DB by CCDS ID:3359.2Re-query CCDS DB by GeneID:339983See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 3359.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data. There are no human transcripts supporting this extension, but it is supported by data in homologs, including mouse NP_001001985.3 (CCDS19210.1) and zebrafish NP_001077308.1.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3359.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000423729.3 ENSP00000413064.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000423729.3Link to Ensembl Protein Viewer:ENSP00000413064.2Re-query CCDS DB by Nucleotide ID:ENST00000423729Re-query CCDS DB by Protein ID:ENSP00000413064
Original member Current member NCBI NM_178557.4 NP_848652.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178557.4Link to Protein Sequence:NP_848652.2Re-query CCDS DB by Nucleotide ID:NM_178557Re-query CCDS DB by Protein ID:NP_848652Link to BLAST:NP_848652.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848652.2 302 Q8N9F0 302 100% 0 0

Chromosomal Locations for CCDS 3359.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2059512 2059887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2060998 2061162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2063760 2064127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGCATTGTGGGCCTCCCGACATGGTCTGCGAGACGAAGATCGTGGCCGCCGAGGACCATGAGGCGCTGC
CGGGGGCCAAGAAGGACGCGCTGCTCGCCGCCGCCGGCGCCATGTGGCCCCCGCTGCCCGCCGCGCCCGG
GCCGGCCGCCGCGCCCCCCGCGCCCCCACCTGCCCCGGTGGCTCAGCCTCACGGCGGGGCGGGGGGCGCG
GGGCCGCCGGGGGGGCGCGGCGTGTGCATCCGCGAGTTCCGTGCGGCCGAGCAGGAGGCGGCGCGCCGCA
TCTTCTACGACGGCATCATGGAGCGCATCCCTAACACGGCCTTCCGCGGCCTGCGGCAGCACCCGCGCGC
GCAGCTGCTCTACGCCCTGCTGGCGGCGCTGTGCTTCGCCGTGAGCCGCTCGCTGCTGCTGACGTGCCTG
GTGCCGGCCGCGCTGCTGGGCCTGCGCTACTACTACAGCCGCAAGGTGATCCGCGCCTACCTGGAGTGCG
CGCTGCACACGGACATGGCGGACATCGAGCAGTACTACATGAAGCCGCCCGGCTCCTGCTTCTGGGTGGC
CGTGCTGGATGGCAACGTGGTGGGCATTGTGGCTGCACGGGCCCACGAGGAGGACAACACGGTGGAGCTG
CTGCGGATGTCTGTGGACTCACGTTTCCGAGGCAAGGGCATCGCCAAGGCGCTGGGCCGGAAGGTGCTGG
AGTTCGCCGTGGTGCACAACTACTCCGCGGTGGTGCTGGGCACGACGGCCGTCAAGGTGGCCGCCCACAA
GCTCTACGAGTCGCTGGGCTTCAGACACATGGGCGCCAGTGACCACTACGTGCTGCCGGGCATGACCCTC
TCGCTGGCTGAGCGCCTCTTCTTCCAGGTCCGCTACCACCGCTACCGCCTGCAGCTGCGCGAGGAGTGA

Translation (302 aa):
MHCGPPDMVCETKIVAAEDHEALPGAKKDALLAAAGAMWPPLPAAPGPAAAPPAPPPAPVAQPHGGAGGA
GPPGGRGVCIREFRAAEQEAARRIFYDGIMERIPNTAFRGLRQHPRAQLLYALLAALCFAVSRSLLLTCL
VPAALLGLRYYYSRKVIRAYLECALHTDMADIEQYYMKPPGSCFWVAVLDGNVVGIVAARAHEEDNTVEL
LRMSVDSRFRGKGIAKALGRKVLEFAVVHNYSAVVLGTTAVKVAAHKLYESLGFRHMGASDHYVLPGMTL
SLAERLFFQVRYHRYRLQLREE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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