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Report for CCDS3367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3367.1 Public Homo sapiens 4 RGS12 24 110 108 CCDS HistoryNCBI Gene:6002Re-query CCDS DB by CCDS ID:3367.1Re-query CCDS DB by GeneID:6002See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3367.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382788.7 ENSP00000372238.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382788.7Link to Ensembl Protein Viewer:ENSP00000372238.3Re-query CCDS DB by Nucleotide ID:ENST00000382788Re-query CCDS DB by Protein ID:ENSP00000372238
Original member Current member NCBI NM_001394156.1 NP_001381085.1 Accepted alive Link to Nucleotide Sequence:NM_001394156.1Link to Protein Sequence:NP_001381085.1Re-query CCDS DB by Nucleotide ID:NM_001394156Re-query CCDS DB by Protein ID:NP_001381085Link to BLAST:NP_001381085.1
Original member Current member NCBI NM_002926.5 NP_002917.1 Accepted alive Link to Nucleotide Sequence:NM_002926.5Link to Protein Sequence:NP_002917.1Re-query CCDS DB by Nucleotide ID:NM_002926Re-query CCDS DB by Protein ID:NP_002917Link to BLAST:NP_002917.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381085.1 1376 O14924-4 1376 100% 0 0
NP_002917.1 1376 O14924-4 1376 100% 0 0

Chromosomal Locations for CCDS 3367.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 3316171 3318051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3342937 3343053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3386416 3386437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3414072 3414241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3414752 3414844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3415978 3416121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3416913 3417092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3417388 3417541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3420642 3420718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3422376 3422570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3422905 3422978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3423515 3423641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3425464 3425560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3428090 3428169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3428558 3428711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3430407 3430972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4131 nt):
ATGTTTAGAGCTGGGGAGGCCTCCAAACGCCCATTGCCTGGGCCGTCGCCCCCAAGGGTGCGGAGTGTGG
AG
GTTGCCCGGGGGAGGGCCGGCTACGGATTCACGCTTTCGGGACAGGCACCCTGTGTGCTCAGCTGCGT
C
ATGAGAGGGAGCCCTGCGGATTTCGTGGGCCTCCGAGCTGGAGACCAGATACTTGCTGTCAATGAAATC
AAC
GTGAAAAAAGCATCTCATGAAGATGTAGTGAAATTAATTGGGAAGTGCTCTGGTGTCCTTCACATGG
TG
ATTGCTGAAGGCGTCGGCCGCTTCGAATCCTGTTCCAGTGATGAAGAAGGGGGACTCTATGAAGGAAA
A
GGCTGGCTGAAGCCCAAGCTGGATTCTAAAGCACTAGGTATAAACAGAGCAGAGCGAGTCGTGGAGGAA
ATG
CAGTCTGGTGGAATTTTCAATATGATTTTTGAAAACCCGAGCCTTTGTGCGAGCAATTCAGAGCCCT
TG
AAATTGAAACAAAGATCCCTTTCAGAGTCGGCCGCAACTCGATTTGATGTTGGACATGAAAGTATAAA
T
AATCCAAATCCCAACATGCTTTCTAAGGAGGAAATATCAAAAGTTATTCATGATGATTCGGTTTTCAGC
ATT
GGACTAGAAAGTCATGACGATTTTGCATTGGATGCAAGTATTTTAAACGTGGCGATGATCGTGGGCT
AC
TTAGGCTCCATTGAGCTTCCTTCCACGAGCTCCAACCTGGAGTCCGACAGCTTGCAAGCCATCCGCGG
C
TGCATGCGGCGCCTGCGGGCAGAGCAGAAAATCCACTCGCTGGTGACCATGAAGATCATGCACGACTGT
GTG
CAGCTGAGCACTGACAAGGCTGGAGTCGTGGCCGAGTACCCGGCCGAGAAGCTGGCCTTCAGCGCCG
TG
TGCCCGGACGACCGGCGATTTTTCGGGTTGGTTACCATGCAGACGAATGACGACGGGAGCCTGGCCCA
G
GAGGAGGAGGGCGCCCTGCGGACTTCCTGCCACGTGTTCATGGTGGACCCAGACTTGTTTAATCACAAG
ATC
CACCAAGGCATTGCTCGGCGGTTTGGGTTTGAGTGCACGGCCGACCCAGACACCAATGGCTGTCTGG
AA
TTCCCGGCGTCCTCCCTCCCCGTCCTGCAGTTCATCTCTGTCCTGTACCGAGACATGGGTGAGCTGAT
T
GAGGGCATGCGGGCCCGCGCCTTTCTGGACGGGGACGCCGATGCCCACCAGAACAACAGCACCAGCAGC
AAC
AGTGACAGCGGCATTGGGAACTTCCACCAGGAGGAGAAGAGCAACCGGGTCCTTGTGGTGGACCTGG
GT
GGGAGCTCGAGCAGACACGGCCCCGGAGGCAGCGCGTGGGACGGTGTGGGTGGGAGGGGTGCCCAGCC
C
TGGGGTGCTCCCTGGACTGGGCCCTTCTGTCCGGACCCCGAAGGGAGCCCCCCATTTGAGGCCGCTCAT
CAG
ACTGACAGGTTCTGGGACCTAAACAAGCACCTAGGGCCAGCCTCTCCTGTGGAGGTGCCCCCAGCTT
CC
TTGAGGAGCTCAGTCCCCCCTTCCAAGAGGGGCACCGTGGGTGCTGGCTGTGGTTTCAACCAGCGCTG
G
CTCCCGGTCCACGTGCTCCGGGAGTGGCAGTGCGGACACACCAGCGACCAGGACTCTTACACAGATTCC
ACC
GATGGCTGGTCCAGCATCAACTGCGGCACACTGCCCCCTCCTATGAGCAAGATCCCCGCAGACCGCT
AC
AGGGTGGAGGGCAGCTTCGCGCAGCCCCCGCTGAATGCCCCGAAGAGGGAGTGGTCCAGGAAGGCCTT
T
GGAATGCAAAGCATTTTTGGTCCCCATCGAAATGTTCGAAAGACTAAGGAAGATAAAAAGGGCTCAAAA
TTT
GGGCGGGGAACTGGACTCACTCAGCCTTCTCAACGCACGTCTGCTCGGAGATCATTTGGGAGATCCA
AG
AGATTCAGTATCACTCGCTCCCTTGATGATCTTGAGTCTGCAACTGTGTCTGATGGCGAGTTGACGGG
C
GCCGACCTGAAGGACTGCGTCAGCAACAACAGCCTGAGCAGCAATGCCAGCCTCCCCAGCGTGCAGAGC
TGC
CGGCGCCTGCGTGAGAGGAGGGTCGCCAGCTGGGCCGTGTCCTTTGAGCGCCTGCTGCAGGACCCCG
TC
GGTGTCCGCTACTTCTCTGATTTTCTAAGGAAAGAATTCAGTGAAGAAAACATTTTATTCTGGCAGGC
C
TGTGAATATTTTAATCATGTTCCTGCACATGACAAAAAGGAGCTTTCCTACAGGGCCCGGGAGATTTTC
AGT
AAGTTTCTCTGCAGCAAAGCCACCACCCCGGTCAACATCGACAGCCAGGCCCAGCTAGCAGACGACG
TC
CTCCGCGCACCTCACCCAGACATGTTCAAGGAGCAGCAGCTGCAGATCTTCAATCTCATGAAGTTTGA
T
AGCTACACTCGCTTTCTGAAGTCCCCGCTGTACCAGGAATGCATCCTGGCGGAAGTGGAGGGCCGTGCA
CTC
CCGGACTCGCAGCAGGTCCCCAGCAGCCCGGCTTCCAAGCACAGCCTCGGTTCAGACCACTCCAGTG
TG
TCCACGCCAAAAAAGTTAAGTGGAAAATCAAAATCCGGCCGATCCCTGAATGAAGAGCTGGGGGATGA
G
GACAGCGAGAAGAAGCGGAAAGGCGCGTTTTTCTCGTGGTCGCGGACCAGGAGCACCGGGAGGTCCCAG
AAA
AAGAGGGAGCACGGGGACCACGCAGACGACGCCCTGCATGCCAATGGAGGCCTGTGTCGCCGAGAGT
CG
CAGGGCTCTGTGTCCTCTGCGGGGAGCCTGGACCTGTCGGAGGCCTGCAGGACTTTGGCACCCGAGAA
G
GACAAGGCCACCAAGCACTGCTGCATTCATCTCCCGGATGGGACATCCTGCGTGGTGGCTGTCAAGGCG
GGC
TTCTCCATCAAAGACATCCTGTCCGGACTCTGTGAGCGGCATGGCATCAACGGGGCGGCCGCGGACC
TC
TTCCTGGTGGGCGGGGACAAGCCTCTGGTGCTGCACCAAGACAGTAGCATCTTGGAGTCAAGGGACCT
G
CGCCTAGAAAAGCGCACCTTGTTTCGGCTGGATCTTGTTCCGATTAACCGGTCAGTGGGACTCAAGGCC
AAG
CCCACCAAGCCCGTCACGGAGGTGCTGCGGCCCGTGGTGGCCAGATACGGCCTGGACCTCAGTGGCC
TG
CTGGTGAGGCTGAGTGGAGAGAAGGAGCCCCTGGACCTTGGCGCCCCTATATCGAGTCTGGACGGACA
G
CGGGTTGTCTTGGAGGAGAAGGATCCTTCCAGAGGAAAGGCATCCGCAGATAAACAGAAAGGTGTGCCA
GTG
AAACAGAACACAGCTGTAAATTCCAGCTCCAGAAACCACTCGGCTACGGGAGAGGAAAGAACACTAG
GC
AAGTCTAATTCTATTAAAATAAAAGGAGAAAATGGAAAAAATGCTAGGGATCCCCGGCTTTCAAAGAG
A
GAAGAATCTATTGCAAAGATTGGGAAAAAAAAATATCAGAAAATTAATTTGGACGAAGCAGAGGAGTTT
TTT
GAGCTTATTTCCAAAGCTCAGAGCAACAGAGCAGATGACCAACGTGGGCTGCTAAGGAAGGAAGACC
TG
GTGTTGCCAGAGTTCCTCCGTTTACCTCCTGGTTCCACAGAACTCACCCTCCCCACTCCAGCTGCTGT
G
GCCAAGGGCTTTAGCAAGAGAAGCGCCACAGGCAACGGCCGGGAGAGCGCCTCCCAGCCTGGCGAGCAG
TGG
GAGCCAGTCCAGGAGAGCAGCGACAGCCCGTCCACCAGCCCGGGCTCAGCCTCCAGCCCCCCTGGAC
CT
CCTGGGACGACCCCCCCCGGGCAGAAGTCTCCCAGCGGGCCCTTCTGCACTCCCCAGTCCCCCGTCTC
C
CTCGCGCAGGAGGGCACCGCCCAGATCTGGAAGAGGCAGTCTCAGGAAGTGGAGGCCGGGGGCATCCAG
ACG
GTGGAGGATGAGCACGTGGCCGAGCTGACCCTGATGGGGGAGGGGGACATCAGCAGCCCCAACAGCA
CC
TTGCTGCCGCCGCCCTCCACCCCCCAGGAAGTGCCAGGACCTTCCAGACCAGGTACCTCCAGGTTCTG
A


Translation (1376 aa):
MFRAGEASKRPLPGPSPPRVRSVEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEI
N
VKKASHEDVVKLIGKCSGVLHMVIAEGVGRFESCSSDEEGGLYEGKGWLKPKLDSKALGINRAERVVEE
M
QSGGIFNMIFENPSLCASNSEPLKLKQRSLSESAATRFDVGHESINNPNPNMLSKEEISKVIHDDSVFS
I
GLESHDDFALDASILNVAMIVGYLGSIELPSTSSNLESDSLQAIRGCMRRLRAEQKIHSLVTMKIMHDC
V
QLSTDKAGVVAEYPAEKLAFSAVCPDDRRFFGLVTMQTNDDGSLAQEEEGALRTSCHVFMVDPDLFNHK
I
HQGIARRFGFECTADPDTNGCLEFPASSLPVLQFISVLYRDMGELIEGMRARAFLDGDADAHQNNSTSS
N
SDSGIGNFHQEEKSNRVLVVDLGGSSSRHGPGGSAWDGVGGRGAQPWGAPWTGPFCPDPEGSPPFEAAH
Q
TDRFWDLNKHLGPASPVEVPPASLRSSVPPSKRGTVGAGCGFNQRWLPVHVLREWQCGHTSDQDSYTDS
T
DGWSSINCGTLPPPMSKIPADRYRVEGSFAQPPLNAPKREWSRKAFGMQSIFGPHRNVRKTKEDKK
GSK
F
GRGTGLTQPSQRTSARRSFGRSKRFSITRSLDDLE
SATVSDGELTGADLKDCVSNNSLSSNASLPSVQS
C
RRLRERRVASWAVSFERLLQDPVGVRYFS
DFLRKEFSEENILFWQACEYFNHVPAHDKKELSYRAREIF
S
KFLCSKATTPVNIDSQAQLADDVLRAPHPDMFKEQQLQ
IFNLMKFDSYTRFLKSPLYQECILAEVEGRA
L
PDSQQVPSSPASKHSLGSDHSSVSTPKK
LSGKSKSGRSLNEELGDEDSEKKRKGAFFSWSRTRSTGRSQ
K
KREHGDHAD
DALHANGGLCRRESQGSVSSAGSLDLSEACRTLAPEKDKATKHCCIHLPDGTSCVVAVKA
G
FSIKDILSGLCERHGINGAAADLFLVGGDK
PLVLHQDSSILESRDLRLEKRTLFRLDLVPINRSVGLKA
K
PTKPVTEVLRPVVARYGLDLSGLLVRL
SGEKEPLDLGAPISSLDGQRVVLEEKDPSRGKASADKQKGVP
V
KQNTAVNSSSRNHSAT
GEERTLGKSNSIKIKGENGKNARDPRLSKREESIAKIGKKKYQKINLDEAEEF
F
ELISKAQSNRADDQRGLLRKEDLVLPEFLRLPPGSTELTLPTPAAVAKGFSKRSATGNGRESASQPGEQ
W
EPVQESSDSPSTSPGSASSPPGPPGTTPPGQKSPSGPFCTPQSPVSLAQEGTAQIWKRQSQEVEAGGIQ
T
VEDEHVAELTLMGEGDISSPNSTLLPPPSTPQEVPGPSRPGTSRF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser