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Report for CCDS337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
337.1 Public Homo sapiens 1 LAPTM5 24 110 108 CCDS HistoryNCBI Gene:7805Re-query CCDS DB by CCDS ID:337.1Re-query CCDS DB by GeneID:7805See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 337.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294507.4 ENSP00000294507.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294507.4Link to Ensembl Protein Viewer:ENSP00000294507.3Re-query CCDS DB by Nucleotide ID:ENST00000294507Re-query CCDS DB by Protein ID:ENSP00000294507
Original member Current member NCBI NM_006762.3 NP_006753.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006762.3Link to Protein Sequence:NP_006753.1Re-query CCDS DB by Nucleotide ID:NM_006762Re-query CCDS DB by Protein ID:NP_006753Link to BLAST:NP_006753.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006753.1 262 Q13571 262 100% 0 0

Chromosomal Locations for CCDS 337.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 30733828 30733917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30735173 30735265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30737604 30737699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30738940 30739062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30739809 30739937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30741640 30741716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30742456 30742549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30757659 30757745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGACCCCCGCTTGTCCACTGTCCGCCAGACCTGCTGCTGCTTCAATGTCCGCATCGCAACCACCGCCC
TGGCCATCTACCATGTGATCATGAGCGTCTTGTTGTTCATCGAGCACTCAGTAGAGGTGGCCCATGGCAA
GGCGTCCTGCAAGCTCTCCCAGATGGGCTACCTCAGGATCGCTGACCTGATCTCCAGCTTCCTGCTCATC
ACCATGCTCTTCATCATCAGCCTGAGCCTACTGATCGGCGTAGTCAAGAACCGGGAGAAGTACCTGCTGC
CCTTCCTGTCCCTGCAAATCATGGACTATCTCCTGTGCCTGCTCACCCTGCTGGGCTCCTACATTGAGCT
GCCCGCCTACCTCAAGTTGGCCTCCCGGAGCCGTGCTAGCTCCTCCAAGTTCCCCCTGATGACGCTGCAG
CTGCTGGACTTCTGCCTGAGCATCCTGACCCTCTGCAGCTCCTACATGGAAGTGCCCACCTATCTCAACT
TCAAGTCCATGAACCACATGAATTACCTCCCCAGCCAGGAGGATATGCCTCATAACCAGTTCATCAAGAT
GATGATCATCTTTTCCATCGCCTTCATCACTGTCCTTATCTTCAAGGTCTACATGTTCAAGTGCGTGTGG
CGGTGCTACAGATTGATCAAGTGCATGAACTCGGTGGAGGAGAAGAGAAACTCCAAGATGCTCCAGAAGG
TGGTCCTGCCGTCCTACGAGGAAGCCCTGTCTTTGCCATCGAAGACCCCAGAGGGGGGCCCAGCACCACC
CCCATACTCAGAGGTGTGA

Translation (262 aa):
MDPRLSTVRQTCCCFNVRIATTALAIYHVIMSVLLFIEHSVEVAHGKASCKLSQMGYLRIADLISSFLLI
TMLFIISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELPAYLKLASRSRASSSKFPLMTLQ
LLDFCLSILTLCSSYMEVPTYLNFKSMNHMNYLPSQEDMPHNQFIKMMIIFSIAFITVLIFKVYMFKCVW
RCYRLIKCMNSVEEKRNSKMLQKVVLPSYEEALSLPSKTPEGGPAPPPYSEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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