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Report for CCDS33702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33702.1 Public Homo sapiens 3 MKRN2 24 110 108 CCDS HistoryNCBI Gene:23609Re-query CCDS DB by CCDS ID:33702.1Re-query CCDS DB by GeneID:23609See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33702.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000170447.12 ENSP00000170447.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000170447.12Link to Ensembl Protein Viewer:ENSP00000170447.7Re-query CCDS DB by Nucleotide ID:ENST00000170447Re-query CCDS DB by Protein ID:ENSP00000170447
Original member Current member EBI ENST00000677816.1 ENSP00000502893.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677816.1Link to Ensembl Protein Viewer:ENSP00000502893.1Re-query CCDS DB by Nucleotide ID:ENST00000677816Re-query CCDS DB by Protein ID:ENSP00000502893
Original member Current member NCBI NM_014160.5 NP_054879.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014160.5Link to Protein Sequence:NP_054879.3Re-query CCDS DB by Nucleotide ID:NM_014160Re-query CCDS DB by Protein ID:NP_054879Link to BLAST:NP_054879.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054879.3 416 Q9H000-1 416 100% 0 0

Chromosomal Locations for CCDS 33702.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 12557151 12557176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12568875 12569003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12570071 12570252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12572069 12572373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12574792 12575006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12576631 12576741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12581808 12581952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12582116 12582253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGAGCACCAAGCAGATCACTTGCAGGTATTTTATGCATGGTGTGTGTCGGGAAGGAAGTCAGTGCCTAT
TCTCACATGACTTGGCAAACAGCAAACCGTCCACCATCTGCAAGTACTACCAGAAGGGCTACTGTGCCTA
TGGAACTCGGTGCAGATATGACCACACGAGGCCCTCTGCTGCAGCTGGAGGTGCTGTGGGCACCATGGCC
CACAGTGTGCCCTCCCCAGCTTTCCACAGTCCTCACCCTCCTTCCGAGGTCACTGCATCCATTGTGAAAA
CTAACTCACATGAACCCGGAAAGCGTGAAAAGAGAACATTGGTTCTTAGAGACCGAAATCTCTCTGGCAT
GGCTGAAAGGAAGACCCAGCCGAGCATGGTGAGTAATCCAGGCAGCTGCAGCGACCCCCAGCCCAGCCCC
GAGATGAAGCCGCATTCCTACCTGGATGCCATCAGGAGTGGCCTTGATGACGTGGAGGCCAGCAGCTCCT
ACAGCAACGAGCAGCAGCTGTGCCCCTACGCAGCTGCTGGGGAGTGCCGGTTTGGGGATGCCTGTGTCTA
CCTGCACGGGGAGGTGTGTGAAATCTGTAGGCTGCAAGTCTTGCACCCATTCGACCCAGAGCAGAGGAAG
GCTCATGAAAAGATCTGCATGTTGACGTTCGAACACGAGATGGAAAAGGCCTTTGCCTTCCAGGCAAGCC
AGGACAAAGTGTGCAGTATCTGCATGGAAGTGATCCTGGAGAAGGCCTCTGCTTCTGAGAGGAGATTTGG
GATTCTCTCCAATTGCAATCACACGTACTGTTTGTCCTGCATCCGGCAGTGGCGGTGTGCCAAACAGTTT
GAAAACCCAATCATTAAGTCTTGTCCAGAATGCCGTGTGATATCAGAGTTTGTAATTCCAAGTGTGTATT
GGGTGGAAGATCAGAATAAAAAGAACGAGTTGATTGAAGCTTTCAAACAGGGGATGGGGAAAAAAGCCTG
TAAATACTTTGAGCAAGGCAAGGGGACCTGCCCATTTGGAAGCAAATGTCTTTATCGCCATGCTTACCCC
GATGGGCGGCTAGCAGAGCCTGAGAAACCTCGGAAACAGCTCAGTTCTCAAGGCACTGTGAGGTTCTTTA
ATTCAGTGCGGCTCTGGGATTTCATCGAGAACCGAGAAAGCCGGCATGTCCCCAACAATGAAGATGTCGA
CATGACAGAGCTCGGGGACCTCTTCATGCACCTTTCTGGAGTGGAATCATCAGAACCCTAA

Translation (416 aa):
MSTKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAAGGAVGTMA
HSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKTQPSMVSNPGSCSDPQPSP
EMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRFGDACVYLHGEVCEICRLQVLHPFDPEQRK
AHEKICMLTFEHEMEKAFAFQASQDKVCSICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQF
ENPIIKSCPECRVISEFVIPSVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYP
DGRLAEPEKPRKQLSSQGTVRFFNSVRLWDFIENRESRHVPNNEDVDMTELGDLFMHLSGVESSEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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