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Report for CCDS3376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3376.1 Public Homo sapiens 4 NSG1 24 110 108 CCDS HistoryNCBI Gene:27065Re-query CCDS DB by CCDS ID:3376.1Re-query CCDS DB by GeneID:27065See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3376.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397958.5 ENSP00000381049.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397958.5Link to Ensembl Protein Viewer:ENSP00000381049.1Re-query CCDS DB by Nucleotide ID:ENST00000397958Re-query CCDS DB by Protein ID:ENSP00000381049
Original member Current member EBI ENST00000421177.6 ENSP00000388823.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421177.6Link to Ensembl Protein Viewer:ENSP00000388823.2Re-query CCDS DB by Nucleotide ID:ENST00000421177Re-query CCDS DB by Protein ID:ENSP00000388823
Original member Current member EBI ENST00000433139.6 ENSP00000408833.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433139.6Link to Ensembl Protein Viewer:ENSP00000408833.2Re-query CCDS DB by Nucleotide ID:ENST00000433139Re-query CCDS DB by Protein ID:ENSP00000408833
Original member Current member EBI ENST00000505246.5 ENSP00000421841.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505246.5Link to Ensembl Protein Viewer:ENSP00000421841.1Re-query CCDS DB by Nucleotide ID:ENST00000505246Re-query CCDS DB by Protein ID:ENSP00000421841
Original member Current member EBI ENST00000513829.5 ENSP00000425345.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513829.5Link to Ensembl Protein Viewer:ENSP00000425345.1Re-query CCDS DB by Nucleotide ID:ENST00000513829Re-query CCDS DB by Protein ID:ENSP00000425345
Original member Current member EBI ENST00000506380.5 ENSP00000425423.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506380.5Link to Ensembl Protein Viewer:ENSP00000425423.1Re-query CCDS DB by Nucleotide ID:ENST00000506380Re-query CCDS DB by Protein ID:ENSP00000425423
Original member Current member EBI ENST00000513555.5 ENSP00000426358.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513555.5Link to Ensembl Protein Viewer:ENSP00000426358.1Re-query CCDS DB by Nucleotide ID:ENST00000513555Re-query CCDS DB by Protein ID:ENSP00000426358
Original member Current member EBI ENST00000621129.5 ENSP00000480081.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000621129.5Link to Ensembl Protein Viewer:ENSP00000480081.1Re-query CCDS DB by Nucleotide ID:ENST00000621129Re-query CCDS DB by Protein ID:ENSP00000480081
Original member Current member NCBI NM_001040101.2 NP_001035190.1 Accepted alive Link to Nucleotide Sequence:NM_001040101.2Link to Protein Sequence:NP_001035190.1Re-query CCDS DB by Nucleotide ID:NM_001040101Re-query CCDS DB by Protein ID:NP_001035190Link to BLAST:NP_001035190.1
Original member Current member NCBI NM_001287763.2 NP_001274692.1 Accepted alive Link to Nucleotide Sequence:NM_001287763.2Link to Protein Sequence:NP_001274692.1Re-query CCDS DB by Nucleotide ID:NM_001287763Re-query CCDS DB by Protein ID:NP_001274692Link to BLAST:NP_001274692.1
Original member Current member NCBI NM_014392.5 NP_055207.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014392.5Link to Protein Sequence:NP_055207.1Re-query CCDS DB by Nucleotide ID:NM_014392Re-query CCDS DB by Protein ID:NP_055207Link to BLAST:NP_055207.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035190.1 185 P42857-1 185 100% 0 0
NP_001274692.1 185 P42857-1 185 100% 0 0
NP_055207.1 185 P42857-1 185 100% 0 0

Chromosomal Locations for CCDS 3376.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 4387630 4387758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4391475 4391591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4409573 4409683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4417235 4417435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGGTGAAGTTGGGGAACAATTTCGCAGAGAAGGGCACCAAGCAGCCGCTGCTGGAGGATGGCTTCGACA
CCATTCCCCTGATGACGCCCCTCGATGTCAATCAGCTGCAGTTCCCGCCCCCGGATAAGGTGGTCGTGAA
AACTAAGACCGAGTATGAACCTGACCGCAAGAAAGGGAAAGCACGTCCTCCCCAAATTGCTGAGTTCACC
GTCAGCATCACGGAGGGTGTCACCGAGAGGTTTAAGGTCTCCGTGTTGGTCCTCTTCGCCCTGGCCTTCC
TCACCTGCGTCGTCTTCCTGGTTGTCTACAAGGTGTACAAGTATGACCGCGCCTGCCCCGATGGGTTCGT
CCTCAAGAACACCCAGTGCATCCCAGAAGGCTTGGAGAGCTACTACGCGGAGCAAGACTCCAGTGCCCGG
GAGAAATTTTACACAGTCATAAACCACTACAACCTGGCCAAGCAGAGCATCACGCGCTCCGTATCGCCCT
GGATGTCAGTTCTGTCAGAAGAGAAGCTGTCCGAGCAGGAGACTGAAGCGGCTGAGAAGTCAGCTTAG

Translation (185 aa):
MVKLGNNFAEKGTKQPLLEDGFDTIPLMTPLDVNQLQFPPPDKVVVKTKTEYEPDRKKGKARPPQIAEFT
VSITEGVTERFKVSVLVLFALAFLTCVVFLVVYKVYKYDRACPDGFVLKNTQCIPEGLESYYAEQDSSAR
EKFYTVINHYNLAKQSITRSVSPWMSVLSEEKLSEQETEAAEKSA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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