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Report for CCDS33769.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33769.3 Public Homo sapiens 3 SPCS1 24 110 108 CCDS HistoryNCBI Gene:28972Re-query CCDS DB by CCDS ID:33769.3Re-query CCDS DB by GeneID:28972See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 33769.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33769.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619898.5 ENSP00000478310.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000619898.5Link to Ensembl Protein Viewer:ENSP00000478310.2Re-query CCDS DB by Nucleotide ID:ENST00000619898Re-query CCDS DB by Protein ID:ENSP00000478310
Original member Current member NCBI NM_014041.5 NP_054760.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014041.5Link to Protein Sequence:NP_054760.4Re-query CCDS DB by Nucleotide ID:NM_014041Re-query CCDS DB by Protein ID:NP_054760Link to BLAST:NP_054760.4

Chromosomal Locations for CCDS 33769.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52706247 52706282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52706644 52706703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52706793 52706879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52707687 52707812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (309 nt):
ATGCTGGAGCATCTGAGCTCGCTGCCCACGCAGATGGATTACAAGGGCCAGAAGCTAGCTGAACAGATGT
TTCAGGGAATTATTCTTTTTTCTGCAATAGTTGGATTTATCTACGGGTACGTGGCTGAACAGTTCGGGTG
GACTGTCTATATAGTTATGGCCGGATTTGCTTTTTCATGTTTGCTGACACTTCCTCCATGGCCCATCTAT
CGCCGGCATCCTCTCAAGTGGTTACCTGTTCAAGAATCAAGCACAGACGACAAGAAACCAGGGGAAAGAA
AAATTAAGAGGCATGCTAAAAATAATTGA

Translation (102 aa):
MLEHLSSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIY
RRHPLKWLPVQESSTDDKKPGERKIKRHAKNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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