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Report for CCDS33816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33816.1 Public Homo sapiens 3 TAGLN3 24 110 108 CCDS HistoryNCBI Gene:29114Re-query CCDS DB by CCDS ID:33816.1Re-query CCDS DB by GeneID:29114See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33816.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273368.8 ENSP00000273368.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000273368.8Link to Ensembl Protein Viewer:ENSP00000273368.4Re-query CCDS DB by Nucleotide ID:ENST00000273368Re-query CCDS DB by Protein ID:ENSP00000273368
Original member Current member EBI ENST00000393917.6 ENSP00000377494.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393917.6Link to Ensembl Protein Viewer:ENSP00000377494.2Re-query CCDS DB by Nucleotide ID:ENST00000393917Re-query CCDS DB by Protein ID:ENSP00000377494
Original member Current member EBI ENST00000455401.6 ENSP00000391160.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455401.6Link to Ensembl Protein Viewer:ENSP00000391160.2Re-query CCDS DB by Nucleotide ID:ENST00000455401Re-query CCDS DB by Protein ID:ENSP00000391160
Original member Current member EBI ENST00000478951.6 ENSP00000419105.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000478951.6Link to Ensembl Protein Viewer:ENSP00000419105.1Re-query CCDS DB by Nucleotide ID:ENST00000478951Re-query CCDS DB by Protein ID:ENSP00000419105
Original member Current member NCBI NM_001008272.2 NP_001008273.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008272.2Link to Protein Sequence:NP_001008273.1Re-query CCDS DB by Nucleotide ID:NM_001008272Re-query CCDS DB by Protein ID:NP_001008273Link to BLAST:NP_001008273.1
Original member Current member NCBI NM_001008273.2 NP_001008274.1 Accepted alive Link to Nucleotide Sequence:NM_001008273.2Link to Protein Sequence:NP_001008274.1Re-query CCDS DB by Nucleotide ID:NM_001008273Re-query CCDS DB by Protein ID:NP_001008274Link to BLAST:NP_001008274.1
Original member Current member NCBI NM_013259.3 NP_037391.2 Accepted alive Link to Nucleotide Sequence:NM_013259.3Link to Protein Sequence:NP_037391.2Re-query CCDS DB by Nucleotide ID:NM_013259Re-query CCDS DB by Protein ID:NP_037391Link to BLAST:NP_037391.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008273.1 199 Q9UI15 199 100% 0 0
NP_001008274.1 199 Q9UI15 199 100% 0 0
NP_037391.2 199 Q9UI15 199 100% 0 0

Chromosomal Locations for CCDS 33816.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 111999423 111999602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112000772 112000946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112011763 112011865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112013410 112013551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGCTAACAGGGGCCCGAGCTATGGCTTAAGCCGAGAGGTGCAGGAGAAGATCGAGCAGAAGTATGATG
CGGACCTGGAGAACAAGCTGGTGGACTGGATCATCCTGCAGTGCGCCGAGGACATAGAGCACCCGCCCCC
CGGCAGGGCCCATTTTCAGAAATGGTTAATGGACGGGACGGTCCTGTGCAAGCTGATAAATAGTTTATAC
CCACCAGGACAAGAGCCCATACCCAAGATCTCAGAGTCAAAGATGGCTTTTAAGCAGATGGAGCAAATCT
CCCAGTTCCTAAAAGCTGCGGAGACCTATGGTGTCAGAACCACCGACATCTTTCAGACGGTGGATCTATG
GGAAGGGAAGGACATGGCAGCTGTGCAGAGGACCCTGATGGCTTTAGGCAGCGTTGCAGTCACCAAGGAT
GATGGCTGCTATCGGGGAGAGCCATCCTGGTTTCACAGGAAAGCCCAGCAGAATCGGAGAGGCTTTTCCG
AGGAGCAGCTTCGCCAGGGACAGAACGTAATAGGCCTGCAGATGGGCAGCAACAAGGGAGCCTCCCAGGC
GGGCATGACAGGGTACGGGATGCCCAGGCAGATCATGTAG

Translation (199 aa):
MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGTVLCKLINSLY
PPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDMAAVQRTLMALGSVAVTKD
DGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQAGMTGYGMPRQIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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