NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33938.1 Public Homo sapiens 4 UVSSA 24 110 108 CCDS HistoryNCBI Gene:57654Re-query CCDS DB by CCDS ID:33938.1Re-query CCDS DB by GeneID:57654See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33938.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389851.10 ENSP00000374501.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389851.10Link to Ensembl Protein Viewer:ENSP00000374501.4Re-query CCDS DB by Nucleotide ID:ENST00000389851Re-query CCDS DB by Protein ID:ENSP00000374501
Original member Current member EBI ENST00000507531.5 ENSP00000421741.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507531.5Link to Ensembl Protein Viewer:ENSP00000421741.1Re-query CCDS DB by Nucleotide ID:ENST00000507531Re-query CCDS DB by Protein ID:ENSP00000421741
Original member Current member EBI ENST00000511216.6 ENSP00000425130.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511216.6Link to Ensembl Protein Viewer:ENSP00000425130.1Re-query CCDS DB by Nucleotide ID:ENST00000511216Re-query CCDS DB by Protein ID:ENSP00000425130
Original member Current member EBI ENST00000677286.1 ENSP00000503948.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677286.1Link to Ensembl Protein Viewer:ENSP00000503948.1Re-query CCDS DB by Nucleotide ID:ENST00000677286Re-query CCDS DB by Protein ID:ENSP00000503948
Original member Current member EBI ENST00000679192.1 ENSP00000504544.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679192.1Link to Ensembl Protein Viewer:ENSP00000504544.1Re-query CCDS DB by Nucleotide ID:ENST00000679192Re-query CCDS DB by Protein ID:ENSP00000504544
Original member Current member NCBI NM_001317934.2 NP_001304863.1 Accepted alive Link to Nucleotide Sequence:NM_001317934.2Link to Protein Sequence:NP_001304863.1Re-query CCDS DB by Nucleotide ID:NM_001317934Re-query CCDS DB by Protein ID:NP_001304863Link to BLAST:NP_001304863.1
Original member Current member NCBI NM_001317935.2 NP_001304864.1 Accepted alive Link to Nucleotide Sequence:NM_001317935.2Link to Protein Sequence:NP_001304864.1Re-query CCDS DB by Nucleotide ID:NM_001317935Re-query CCDS DB by Protein ID:NP_001304864Link to BLAST:NP_001304864.1
Original member Current member NCBI NM_020894.4 NP_065945.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020894.4Link to Protein Sequence:NP_065945.2Re-query CCDS DB by Nucleotide ID:NM_020894Re-query CCDS DB by Protein ID:NP_065945Link to BLAST:NP_065945.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304863.1 709 Q2YD98-1 709 100% 0 0
NP_001304864.1 709 Q2YD98-1 709 100% 0 0
NP_065945.2 709 Q2YD98-1 709 100% 0 0

Chromosomal Locations for CCDS 33938.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 1348092 1348189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1349524 1349854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1351715 1351835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1353030 1353413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1354735 1354847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1355117 1355245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1366320 1366431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1375364 1375508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1376034 1376168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1380047 1380230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1380880 1380988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1383766 1383940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1385868 1385961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGGATCAGAAACTTTCGAAGTTGGTAGAAGAGCTCACAACTTCAGGAGAACCCCGACTAAATCCTGAGA
AAATGAAGGAACTGAAGAAAATTTGCAAGTCTTCAGAGGAGCAGCTGAGCCGCGCCTACCGCCTGCTGAT
AGCACAGCTGACCCAGGAGCACGCCGAGATCCGTCTCTCAGCCTTCCAGATTGTGGAGGAACTCTTCGTC
AGGTCTCACCAGTTCCGGATGCTGGTTGTTTCCAACTTCCAGGAGTTCCTGGAGCTCACGCTGGGCACAG
ACCCCGCACAGCCTCTGCCGCCCCCCAGGGAGGCGGCACAGAGGCTGAGGCAGGCGACCACCCGGGCCGT
GGAAGGGTGGAATGAGAAGTTTGGGGAGGCCTACAAGAAGCTTGCCTTGGGCTACCACTTCTTAAGACAC
AACAAAAAGGTGGATTTTCAAGACACGAATGCTCGGAGTCTGGCAGAAAGGAAGAGAGAAGAGGAGAAGC
AGAAGCACTTGGATAAAATTTATCAAGAAAGAGCCAGCCAGGCGGAGAGGGAGATGCAAGAAATGTCTGG
AGAAATTGAATCCTGCTTGACGGAGGTAGAGAGCTGCTTTAGGCTGCTGGTGCCTTTTGACTTTGACCCG
AACCCGGAGACGGAATCCCTTGGCATGGCTTCTGGCATGTCCGATGCCCTTCGCTCCTCCTGCGCGGGCC
AGGTGGGCCCCTGCCGGTCTGGCACCCCTGACCCCCGGGACGGGGAGCAGCCCTGCTGCAGTAGAGACCT
GCCTGCCTCTGCAGGCCACCCCAGAGCGGGCGGCGGGGCACAGCCATCCCAGACAGCCACAGGTGACCCC
TCAGATGAGGACGAGGACAGCGACCTCGAGGAGTTTGTGCGGAGCCACGGGCTGGGCTCGCACAAGTACA
CGCTGGATGTGGAGCTCTGCTCAGAGGGCCTGAAGGTGCAGGAGAACGAGGACAACCTTGCTCTCATCCA
CGCCGCCCGCGACACACTCAAGCTCATCCGGAACAAGTTCCTGCCGGCTGTGTGCTCGTGGATCCAGCGC
TTCACCCGCGTCGGGACCCACGGTGGATGTTTAAAGCGTGCCATTGACCTGAAGGCTGAATTGGAGCTCG
TACTGAGAAAATACAAGGAGCTGGACATCGAGCCTGAGGGAGGGGAAAGGCGCAGGACAGAAGCCCTGGG
GGATGCGGAGGAAGATGAGGACGATGAGGACTTTGTGGAGGTCCCTGAGAAGGAGGGGTATGAGCCACAC
ATCCCCGACCACTTGCGGCCTGAGTATGGGCTGGAGGCAGCACCAGAGAAAGACACAGTTGTGCGGTGCT
TGCGGACGAGGACGAGGATGGACGAGGAGGTGTCGGACCCCACCTCTGCGGCTGCTCAGCTGCGGCAGCT
CCGGGACCACTTGCCTCCACCCTCATCTGCCAGCCCCTCCAGAGCGTTGCCAGAGCCACAGGAGGCCCAG
AAGCTGGCAGCAGAGCGGGCCCGGGCGCCTGTGGTGCCCTACGGCGTGGACCTGCACTACTGGGGCCAGG
AGCTCCCCACAGCCGGGAAGATTGTCAAGTCTGACTCCCAGCACCGCTTCTGGAAGCCCAGCGAGGTGGA
GGAGGAAGTGGTCAATGCCGACATCTCCGAGATGCTCCGGAGCCGCCACATCACTTTTGCCGGGAAGTTT
GAGCCTGTGCAGCACTGGTGCCGTGCCCCGAGGCCAGACGGCCGGCTCTGTGAGCGCCAAGACCGGCTGA
AGTGCCCTTTCCATGGGAAGATTGTTCCACGGGACGACGAAGGACGGCCGCTCGACCCGGAAGACAGGGC
TCGTGAGCAGCGGCGGCAGCTGCAGAAGCAGGAGCGCCCGGAATGGCAGGACCCTGAGTTGATGAGAGAC
GTGGAAGCAGCCACAGGGCAGGATCTCGGCTCATCCAGGTACAGCGGGAAAGGCAGGGGGAAGAAGAGGA
GGTACCCCAGCCTCACCAACCTGAAGGCTCAGGCTGATACCGCCCGCGCTCGCATTGGGAGAAAAGTCTT
CGCCAAGGCAGCTGTGCGGAGGGTAGTGGCAGCCATGAACCGGATGGACCAGAAGAAGCACGAGAAGTTT
TCAAACCAGTTTAACTACGCACTGAACTAG

Translation (709 aa):
MDQKLSKLVEELTTSGEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLSAFQIVEELFV
RSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGWNEKFGEAYKKLALGYHFLRH
NKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAEREMQEMSGEIESCLTEVESCFRLLVPFDFDP
NPETESLGMASGMSDALRSSCAGQVGPCRSGTPDPRDGEQPCCSRDLPASAGHPRAGGGAQPSQTATGDP
SDEDEDSDLEEFVRSHGLGSHKYTLDVELCSEGLKVQENEDNLALIHAARDTLKLIRNKFLPAVCSWIQR
FTRVGTHGGCLKRAIDLKAELELVLRKYKELDIEPEGGERRRTEALGDAEEDEDDEDFVEVPEKEGYEPH
IPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPPSSASPSRALPEPQEAQ
KLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSDSQHRFWKPSEVEEEVVNADISEMLRSRHITFAGKF
EPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGRPLDPEDRAREQRRQLQKQERPEWQDPELMRD
VEAATGQDLGSSRYSGKGRGKKRRYPSLTNLKAQADTARARIGRKVFAKAAVRRVVAAMNRMDQKKHEKF
SNQFNYALN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH