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Report for CCDS34017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34017.1 Public Homo sapiens 4 SOWAHB 24 110 108 CCDS HistoryNCBI Gene:345079Re-query CCDS DB by CCDS ID:34017.1Re-query CCDS DB by GeneID:345079See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34017.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334306.4 ENSP00000334879.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334306.4Link to Ensembl Protein Viewer:ENSP00000334879.2Re-query CCDS DB by Nucleotide ID:ENST00000334306Re-query CCDS DB by Protein ID:ENSP00000334879
Original member Current member NCBI NM_001029870.3 NP_001025041.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001029870.3Link to Protein Sequence:NP_001025041.1Re-query CCDS DB by Nucleotide ID:NM_001029870Re-query CCDS DB by Protein ID:NP_001025041Link to BLAST:NP_001025041.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025041.1 793 A6NEL2 793 100% 0 0

Chromosomal Locations for CCDS 34017.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 76895468 76897849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGGCCCGAGAGCTGAGCCAGGAGGCACTACTGGACTTTCTGTGCCAGGCTGGGGGCCGCGTGACCAACG
CTGCCTTGCTGAGCCACTTCAAGAGCTTTCTCCGAGACCCCGACGCGTCCCCCAGCCAGCACCAGCACCG
CCGCGAGCTCTTCAAGGGCTTCGTCAACTCGGTCGCCGCAGTGCGCCAGGACCCCGACGGCACCAAGTAC
GTGGTGCTCAAGAGGAGATACAGGGACCTTTTGGGGGAGGAGGGGCTGCAGCGACCCCGCGAGCCGCCCG
CGGCCGCCCCCAGTGCAGGGGGAGCTGCGCCCTGCTCCCCGCGAGGCGCGCGCCGGGGGGAGCCGCCCCA
GCAGCAGCCCAGGCGGCGGCGGCGCGAGAAGGAGCCGGAGGAGGAGCCAGCAGGTGCAGCAGCCAGAGCC
GCCGACGCAGCTTGCAATGGACTCCCGGGCAGCGACTCCCGTAGGGCGCCCGGGAAGGGCGGCGGATCGA
AGGGCAGTCCCGGACAGAGGCCGCCGGTGCCCGCAGCTGCAGCGGCAGGGGCCCAGGCGAGAGCGAGCTG
CGCGGCGGCGAAGACGCAGGGCCGCTGCTGCTGGGAATGCCTCCAGAACAACCTGGCTGTACTGCCGGGA
GAGCTCGGCGCACTCCCGCACTCGGCCACCGCGGAGGAGAAGCCGGCACGGGCTCTGCCTGCCCAGGATG
ACCGCGGGGCTTCCAGGGAGCGGGAAGAAGGCGCGCTAGCTGAGCCGGCGCCTGTGCCTGCAGTGGCTCA
CTCGCCTCCCGCCACCGTCGAGGCTGCGACAAGCAGGGCTTCCCCGCCTGCTCTCCTGCCCGGCCCCGCT
CCCCGCGGAGACCGGCCGGAGCTGCTGACCCCCAGCTCCCTGCATTATTCGACCCTGCAGCAGCAGCAGC
AGCGCACTCGAGAGTGGGTGGCCAGGCACCCGCAGGTGCCCGAGGCCCGTGATCAGGGCCCTATCCGCGC
CTGGTCGGTGCTGCCAGACAACTTCCTCCAGCTGCCCTTGGAACCCGGCTCCACGGAGCCTAATTCAGAG
CCGCCAGACCCCTGTCTTTCCTCGCACTCTCTCTTTCCTGTTGTTCCGGATGAGTCCTGGGAATCCTGGG
CGGGGAACCCTTCATTGACTGTCTTTCGCAGCATTCGTTGTCAGCTGTCCCTCCAAGATCTGGATGACTT
TGTGGACCAGGAGAGTGATGGCAGTGAGGAGAGCAGCAGTGGGCCCAAAGACTCCCCGGGGGCTTCTGAA
GAGGGGCTGCAGGTTGTCTTGGGAACCCCAGATAGGGGGAAGCTCAGGAATCCAGCTGGGGGCCTTTCTG
TATCTCGGAAGGAGGGCAGCCCCAGCCGGAGCCCTCAGGGTCTCAGAAACAGAGGGGATGGTCACATCTC
TCAGCAGGTCCCTGCAGGGGCTAATGGCCTTGCAGGCCACCCCCTGAAGCCTTTGCCTTGGCCAGTTCCT
AAGTTAAGGAGGTCCCTCAGGAGGAGCTCTCTGGCAGGGAGAGCCAAATTGTCCTCCTCTGATGAGGAGT
ACCTCGATGAGGGCTTGCTGAAAAGAAGTCGGCGCCCACCTCGATCCAGGAAGCCCTCCAAGGCAGGAAC
GGCACCCAGCCCAAGGGTTGATGCAGGTTTATCACTAAAACTTGCAGAGGTTAAGGCTGTTGTGGCCGAG
CGGGGTTGGCGACACAGCCTGTGGGTCCCCAGTGGGGAGGGGTCTGCAGCCTTGGCCCCCCACAGAACTT
CTGAGCACAAATCATCCCTGGTTCCACTAGATGCCAGGGAGCATGAGTGGATTGTGAAGCTTGCCAGTGG
CTCCTGGATTCAGGTGTGGACTTTGTTCTGGGAGGACCCTCAACTGGCCTTGCACAAAGACTTTTTGACT
GGGTACACTGCGTTGCACTGGATAGCCAAACATGGTGACCTCAGGGCCCTTCAGGACTTGGTGTCTGGAG
CAAAGAAGGCAGGGATTGTCCTTGATGTAAACGTGAGGTCCAGTTGTGGATATACCCCGCTGCACCTTGC
AGCCATTCACGGCCACCAGGGGGTCATCAAATTGCTAGTGCAAAGGTTGGCTTCTCGGGTAAATGTCAGG
GACAGCAGTGGGAAGAAGCCATGGCAGTATCTAACCAGTAATACCTCTGGGGAAATATGGCAGCTGTTGG
GAGCTCCTCGGGGCAAGCCCATTTTCCCTGTCTATCCCTTAGTTGGAAGTTCTTCCCCTACCAGAAAGGC
CAAGAGCAAGGAAATATCTAGAAGTGTCACCCGAAAAACTTCCTTCGCTGCACTACTCAAAAGTCAGCAC
AACAAGTGGAAACTGGCCAACCAGTATGAGAAATTCCACAGTCCAAGGGAAAGAGAAGAGTATAGTGACT
GA

Translation (793 aa):
MARELSQEALLDFLCQAGGRVTNAALLSHFKSFLRDPDASPSQHQHRRELFKGFVNSVAAVRQDPDGTKY
VVLKRRYRDLLGEEGLQRPREPPAAAPSAGGAAPCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAAARA
ADAACNGLPGSDSRRAPGKGGGSKGSPGQRPPVPAAAAAGAQARASCAAAKTQGRCCWECLQNNLAVLPG
ELGALPHSATAEEKPARALPAQDDRGASREREEGALAEPAPVPAVAHSPPATVEAATSRASPPALLPGPA
PRGDRPELLTPSSLHYSTLQQQQQRTREWVARHPQVPEARDQGPIRAWSVLPDNFLQLPLEPGSTEPNSE
PPDPCLSSHSLFPVVPDESWESWAGNPSLTVFRSIRCQLSLQDLDDFVDQESDGSEESSSGPKDSPGASE
EGLQVVLGTPDRGKLRNPAGGLSVSRKEGSPSRSPQGLRNRGDGHISQQVPAGANGLAGHPLKPLPWPVP
KLRRSLRRSSLAGRAKLSSSDEEYLDEGLLKRSRRPPRSRKPSKAGTAPSPRVDAGLSLKLAEVKAVVAE
RGWRHSLWVPSGEGSAALAPHRTSEHKSSLVPLDAREHEWIVKLASGSWIQVWTLFWEDPQLALHKDFLT
GYTALHWIAKHGDLRALQDLVSGAKKAGIVLDVNVRSSCGYTPLHLAAIHGHQGVIKLLVQRLASRVNVR
DSSGKKPWQYLTSNTSGEIWQLLGAPRGKPIFPVYPLVGSSSPTRKAKSKEISRSVTRKTSFAALLKSQH
NKWKLANQYEKFHSPREREEYSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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