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Report for CCDS34051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34051.1 Public Homo sapiens 4 TIFA 24 110 108 CCDS HistoryNCBI Gene:92610Re-query CCDS DB by CCDS ID:34051.1Re-query CCDS DB by GeneID:92610See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34051.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361717.4 ENSP00000354911.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361717.4Link to Ensembl Protein Viewer:ENSP00000354911.2Re-query CCDS DB by Nucleotide ID:ENST00000361717Re-query CCDS DB by Protein ID:ENSP00000354911
Original member Current member EBI ENST00000500655.2 ENSP00000424231.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000500655.2Link to Ensembl Protein Viewer:ENSP00000424231.1Re-query CCDS DB by Nucleotide ID:ENST00000500655Re-query CCDS DB by Protein ID:ENSP00000424231
Original member Current member EBI ENST00000610220.2 ENSP00000516322.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610220.2Link to Ensembl Protein Viewer:ENSP00000516322.1Re-query CCDS DB by Nucleotide ID:ENST00000610220Re-query CCDS DB by Protein ID:ENSP00000516322
Original member Current member NCBI NM_052864.3 NP_443096.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052864.3Link to Protein Sequence:NP_443096.1Re-query CCDS DB by Nucleotide ID:NM_052864Re-query CCDS DB by Protein ID:NP_443096Link to BLAST:NP_443096.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443096.1 184 Q96CG3 184 100% 0 0

Chromosomal Locations for CCDS 34051.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 112277862 112278416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGACCAGTTTTGAAGATGCTGACACAGAAGAGACAGTAACTTGTCTCCAGATGACGGTTTACCATCCTG
GCCAGTTGCAGTGTGGAATATTTCAGTCAATAAGTTTTAACAGAGAGAAACTCCCTTCCAGCGAAGTGGT
GAAATTTGGCCGAAATTCCAACATCTGTCATTATACTTTTCAGGACAAACAGGTTTCCCGAGTTCAGTTT
TCTCTGCAGCTGTTTAAAAAATTCAACAGCTCAGTTCTCTCCTTTGAAATAAAAAATATGAGTAAAAAGA
CCAATCTGATCGTGGACAGCAGAGAGCTGGGCTACCTAAATAAAATGGACCTGCCATACAGGTGCATGGT
CAGATTCGGAGAGTATCAGTTTCTGATGGAGAAGGAAGATGGCGAGTCATTGGAATTTTTTGAGACTCAA
TTTATTTTATCTCCAAGATCACTCTTGCAAGAAAACAACTGGCCACCACACAGGCCCATACCGGAGTATG
GCACTTATTCGCTCTGCTCCTCCCAAAGCAGTTCTCCGACAGAAATGGATGAAAATGAGTCATGA

Translation (184 aa):
MTSFEDADTEETVTCLQMTVYHPGQLQCGIFQSISFNREKLPSSEVVKFGRNSNICHYTFQDKQVSRVQF
SLQLFKKFNSSVLSFEIKNMSKKTNLIVDSRELGYLNKMDLPYRCMVRFGEYQFLMEKEDGESLEFFETQ
FILSPRSLLQENNWPPHRPIPEYGTYSLCSSQSSSPTEMDENES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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