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Report for CCDS34057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34057.1 Public Homo sapiens 4 EXOSC9 24 110 108 CCDS HistoryNCBI Gene:5393Re-query CCDS DB by CCDS ID:34057.1Re-query CCDS DB by GeneID:5393See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34057.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379663.7 ENSP00000368984.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379663.7Link to Ensembl Protein Viewer:ENSP00000368984.3Re-query CCDS DB by Nucleotide ID:ENST00000379663Re-query CCDS DB by Protein ID:ENSP00000368984
Original member Current member NCBI NM_001034194.2 NP_001029366.1 Accepted alive Link to Nucleotide Sequence:NM_001034194.2Link to Protein Sequence:NP_001029366.1Re-query CCDS DB by Nucleotide ID:NM_001034194Re-query CCDS DB by Protein ID:NP_001029366Link to BLAST:NP_001029366.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029366.1 456 Q06265-2 456 100% 0 0

Chromosomal Locations for CCDS 34057.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 121801425 121801490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121801827 121801921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121802674 121802793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121802915 121803017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121804622 121804759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121807540 121807622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121809967 121810099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121811583 121811671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121813234 121813380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121813866 121814047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121816144 121816194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121816369 121816447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121816772 121816856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGAAGGAAACGCCACTCTCAAACTGCGAACGCCGCTTCCTACTCCGTGCCATCGAAGAGAAGAAGCGGC
TGGATGGCAGACAAACCTATGATTATAGGAACATCAGGATCTCATTTGGAACAGATTACGGATGCTGCAT
TGTGGAACTTGGAAAAACAAGAGTTCTTGGACAGGTTTCCTGTGAACTTGTGTCTCCAAAACTCAATCGG
GCAACAGAAGGTATTCTTTTTTTTAACCTTGAACTCTCTCAGATGGCCGCTCCAGCTTTCGAACCTGGCA
GGCAGTCAGATCTCTTGGTGAAGTTGAATCGACTCATGGAAAGATGTCTAAGAAATTCGAAGTGTATAGA
CACTGAGTCTCTCTGTGTTGTTGCTGGTGAAAAGGTTTGGCAAATACGTGTAGACCTACATTTATTAAAT
CATGATGGAAATATTATTGATGCTGCCAGCATTGCTGCAATCGTGGCCTTATGTCATTTCCGAAGACCTG
ATGTCTCTGTCCAAGGAGATGAAGTAACACTGTATACACCTGAAGAGCGTGATCCTGTACCATTAAGTAT
CCACCACATGCCCATTTGTGTCAGTTTTGCCTTTTTCCAGCAAGGAACATATTTATTGGTGGATCCCAAT
GAACGAGAAGAACGTGTGATGGATGGCTTGCTGGTGATTGCCATGAACAAACATCGAGAGATTTGTACTA
TCCAGTCCAGTGGTGGGATAATGCTACTAAAAGATCAAGTTCTGAGATGCAGTAAAATCGCTGGTGTGAA
AGTAGCAGAAATTACAGAGCTAATATTGAAAGCTTTGGAGAATGACCAAAAAGTAAGGAAAGAAGGTGGA
AAGTTTGGTTTTGCAGAGTCTATAGCAAATCAAAGGATCACAGCATTTAAAATGGAAAAGGCCCCTATTG
ATACCTCGGATGTAGAAGAAAAAGCAGAAGAAATCATTGCTGAAGCAGAACCTCCTTCAGAAGTTGTTTC
TACACCTGTGCTATGGACTCCTGGAACTGCCCAAATTGGAGAGGGAGTAGAAAACTCCTGGGGTGATCTT
GAAGACTCTGAGAAGGAAGATGATGAAGGCGGTGGTGATCAAGCTATCATTCTTGATGGTATAAAAATGG
ACACTGGAGTAGAAGTCTCTGATATTGGAAGCCAAGAGCTGGGGTTTCACCATGTTGGCCAGACTGGACT
CGAGTTCCTGACCTCAGATGCTCCCATAATACTCTCAGATAGTGAAGAAGAAGAAATGATCATTTTGGAA
CCAGACAAGAATCCAAAGAAAATAAGAACACAGACCACCAGTGCAAAACAAGAAAAAGCACCAAGTAAAA
AGCCAGTGAAAAGAAGAAAAAAGAAGAGAGCTGCCAATTAA

Translation (456 aa):
MKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNR
ATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLN
HDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPN
EREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGVKVAEITELILKALENDQKVRKEGG
KFGFAESIANQRITAFKMEKAPIDTSDVEEKAEEIIAEAEPPSEVVSTPVLWTPGTAQIGEGVENSWGDL
EDSEKEDDEGGGDQAIILDGIKMDTGVEVSDIGSQELGFHHVGQTGLEFLTSDAPIILSDSEEEEMIILE
PDKNPKKIRTQTTSAKQEKAPSKKPVKRRKKKRAAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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