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Report for CCDS34242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34242.1 Public Homo sapiens 5 KDM3B 24 110 108 CCDS HistoryNCBI Gene:51780Re-query CCDS DB by CCDS ID:34242.1Re-query CCDS DB by GeneID:51780See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34242.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314358.10 ENSP00000326563.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314358.10Link to Ensembl Protein Viewer:ENSP00000326563.5Re-query CCDS DB by Nucleotide ID:ENST00000314358Re-query CCDS DB by Protein ID:ENSP00000326563
Original member Current member NCBI NM_016604.4 NP_057688.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016604.4Link to Protein Sequence:NP_057688.3Re-query CCDS DB by Nucleotide ID:NM_016604Re-query CCDS DB by Protein ID:NP_057688Link to BLAST:NP_057688.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057688.3 1761 Q7LBC6-1 1761 100% 0 0

Chromosomal Locations for CCDS 34242.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138352796 138352987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138372674 138372841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138375093 138375206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138377720 138377825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138379584 138379708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138381516 138381590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138386022 138386621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138391013 138392261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138393171 138393372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138398178 138398392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138399860 138400012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138415132 138415239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138417483 138417610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138418953 138419232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138420706 138420962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138424075 138424341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138425411 138425582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138426975 138427065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138427189 138427319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138427967 138428086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138429826 138429965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138430249 138430425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138431425 138431559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138435620 138435700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5286 nt):
ATGGCGGACGCGGCGGCCTCCCCGGTGGGCAAGCGGCTGCTGCTGCTGTTCGCGGACACTGCGGCCTCAG
CCTCGGCCTCGGCTCCCGCGGCGGCAGCGGCGAGCGGAGATCCGGGGCCTGCGCTGCGCACTCGAGCCTG
GCGGGCCGGCACGGTGCGGGCCATGAGCGGGGCGGTGCCCCAGGACCTAGCGATCTTTGTAGAATTTGAT
GGCTGTAACTGGAAGCAACACTCCTGGGTAAAAGTTCATGCTGAGGAAGTTATCGTGCTTCTGCTGGAAG
GGTCTCTTGTATGGGCGCCCCGTGAGGACCCAGTCCTTCTCCAGGGCATTCGAGTCTCCATTGCACAATG
GCCAGCCCTGACTTTTACTCCCCTTGTAGATAAACTGGGTTTGGGTTCTGTGGTTCCAGTGGAATATCTT
CTGGATCGAGAGCTTCGGTTCCTGTCAGATGCCAATGGGTTGCATCTGTTTCAGATGGGAACAGATAGCC
AAAACCAGATTCTTTTGGAACATGCTGCACTGAGAGAAACAGTTAATGCTTTGATCAGTGACCAAAAGCT
ACAAGAGATATTCAGCCGAGGTCCCTACAGTGTTCAAGGTCACAGGGTCAAAATATATCAGCCAGAGGGG
GAAGAAGGGTGGCTCTATGGTGTTGTGAGCCATCAGGACTCCATCACTCGTCTTATGGAGGTGTCTGTAA
CTGAGAGTGGTGAGATCAAGTCGGTAGATCCCAGACTAATCCATGTGATGCTGATGGATAATTCAGCGCC
TCAAAGCGAGGGGGGTACGTTAAAAGCAGTAAAATCTTCCAAAGGAAAGAAGAAGAGAGAAAGCATAGAG
GGGAAAGATGGCCGGAGGAGGAAAAGTGCTTCGGACTCTGGGTGTGACCCTGCATCAAAGAAATTAAAAG
GAGACAGGGGTGAAGTAGACAGTAATGGGAGCGATGGAGGTGAGGCAAGCCGAGGGCCCTGGAAAGGAGG
GAATGCCAGTGGAGAGCCAGGGCTGGATCAGAGAGCCAAGCAGCCACCGTCTACATTTGTCCCCCAGATA
AACCGCAACATTCGCTTTGCCACTTACACCAAAGAAAACGGCAGGACTCTGGTGGTGCAGGATGAGCCTG
TAGGTGGGGACACACCTGCATCTTTCACTCCATATTCTACAGCCACAGGTCAGACACCTTTGGCCCCAGA
GGTGGGTGGAGCCGAAAACAAAGAGGCAGGAAAAACACTGGAACAAGTTGGCCAGGGCATAGTGGCTTCC
GCAGCTGTGGTCACTACCGCCAGCTCCACCCCAAACACAGTGAGGATCTCAGACACTGGCCTTGCAGCAG
GGACTGTGCCAGAAAAACAGAAAGGCAGCCGGTCGCAGGCCTCGGGAGAGAATTCAAGAAATTCTATTCT
GGCCTCTTCTGGATTTGGAGCACCTCTCCCTAGTTCATCGCAACCTTTGACTTTTGGAAGTGGAAGGAGC
CAGTCCAATGGTGTTCTAGCCACAGAGAACAAACCTTTGGGCTTCTCTTTTGGCTGTAGCTCTGCACAAG
AGGCACAGAAAGACACTGATCTCTCCAAAAACTTGTTTTTTCAATGCATGTCCCAAACTTTACCTACCAG
TAACTACTTCACTACTGTTTCAGAGAGTTTGGCTGATGATTCTTCTAGTCGGGACTCATTCAAACAAAGC
CTTGAGAGCCTGAGCTCAGGCCTGTGTAAAGGCAGATCCGTTCTTGGAACAGACACTAAGCCAGGCTCTA
AGGCTGGCAGCTCTGTGGACCGGAAAGTGCCTGCAGAGTCCATGCCCACCCTCACTCCAGCCTTCCCACG
GAGCCTCCTAAATGCCCGTACCCCAGAGAATCATGAAAATCTATTTTTACAGCCCCCCAAATTGTCCCGA
GAAGAGCCTTCTAATCCTTTCCTGGCATTTGTGGAGAAAGTTGAACACAGCCCTTTCAGTAGTTTTGCAT
CTCAGGCATCAGGTAGCTCCTCTTCTGCTACCACTGTCACCTCCAAGGTGGCACCCAGCTGGCCCGAGTC
TCACTCCTCTGCAGATTCGGCATCTTTAGCAAAGAAGAAACCCCTCTTCATTACAACTGACTCCTCCAAG
CTAGTATCTGGTGTTCTGGGCTCAGCTCTTACCAGTGGGGGCCCAAGCCTCTCTGCCATGGGGAATGGCC
GCTCCAGCTCGCCCACCAGCAGCCTCACTCAGCCCATTGAGATGCCAACTCTCTCCTCTAGCCCCACAGA
GGAGAGGCCAACTGTGGGGCCTGGGCAGCAGGACAATCCCCTCCTCAAAACCTTTAGTAACGTCTTTGGC
AGGCACTCAGGCGGCTTTCTGTCCTCCCCGGCAGATTTTTCACAGGAGAACAAAGCTCCTTTTGAAGCTG
TGAAAAGGTTCTCACTGGATGAACGAAGCTTGGCTTGCAGACAAGACTCGGACTCCAGCACCAACAGTGA
CCTGTCAGATTTGAGTGACTCTGAGGAGCAGCTGCAGGCTAAGACAGGCCTGAAGGGAATTCCAGAGCAC
CTGATGGGGAAGCTGGGCCCCAATGGGGAGCGCAGTGCTGAGCTGTTGCTGGGCAAAAGCAAAGGGAAGC
AGGCCCCCAAGGGCCGGCCTCGGACTGCCCCCCTGAAAGTTGGCCAGTCAGTGCTGAAAGATGTAAGCAA
AGTGAAGAAGCTGAAGCAATCTGGAGAGCCCTTCCTGCAGGATGGGTCATGCATCAATGTGGCACCTCAT
CTGCACAAGTGTCGTGAATGCCGCCTGGAGCGGTACCGGAAGTTTAAGGAACAGGAGCAAGATGATTCTA
CTGTAGCCTGCCGTTTCTTTCACTTCCGGAGGTTGATCTTCACTCGAAAAGGGGTACTCCGTGTGGAGGG
GTTTTTAAGCCCCCAGCAAAGTGACCCTGATGCCATGAACCTGTGGATTCCCTCTTCCTCCCTAGCAGAA
GGGATAGATCTAGAGACCTCAAAATACATCCTGGCCAATGTTGGGGACCAGTTCTGCCAGCTCGTAATGT
CTGAGAAGGAGGCCATGATGATGGTGGAGCCACACCAGAAAGTGGCATGGAAGCGAGCTGTGCGTGGTGT
ACGGGAGATGTGTGATGTGTGTGAAACAACTCTCTTCAACATCCACTGGGTTTGTCGCAAATGTGGATTT
GGGGTCTGCCTTGACTGTTACCGGCTCAGGAAAAGCCGGCCACGCAGTGAGACAGAAGAGATGGGTGATG
AAGAAGTTTTCTCCTGGTTGAAGTGTGCAAAGGGACAGTCCCACGAACCAGAGAATCTCATGCCCACACA
AATTATTCCTGGCACAGCTCTTTACAATATTGGAGACATGGTACATGCTGCCCGGGGCAAGTGGGGAATT
AAAGCAAACTGCCCTTGTATCAGTCGACAGAACAAATCTGTATTGAGACCTGCCGTCACCAATGGGATGT
CACAGCTTCCTAGCATAAACCCTAGTGCCTCTTCTGGAAACGAAACTACCTTCTCTGGTGGAGGAGGACC
GGCACCAGTAACAACTCCAGAGCCGGACCATGTTCCCAAAGCCGACAGCACTGACATCAGATCTGAAGAG
CCTCTGAAAACAGACAGTTCGGCATCAAATAGCAATAGTGAACTGAAAGCCATCAGGCCTCCTTGCCCTG
ACACGGCCCCACCCTCCTCCGCCCTGCACTGGTTGGCAGATTTAGCAACTCAGAAGGCTAAAGAAGAAAC
AAAAGAAGCAGGGTCCCTGAGGTCGGTGCTCAATAAAGAGTCTCATTCACCCTTTGGGCTGGACTCGTTC
AACTCCACTGCAAAGGTCTCTCCGCTGACTCCAAAGCTTTTTAACAGTCTGTTGCTGGGTCCCACTGCCT
CCAACAACAAAACCGAAGGGTCTAGCCTTCGAGACCTCCTTCACTCCGGGCCGGGAAAACTTCCTCAAAC
CCCCTTGGACACAGGCATACCCTTTCCCCCGGTCTTCTCTACATCCTCAGCAGGAGTGAAGAGCAAGGCC
AGCCTACCCAACTTTCTTGACCACATCATTGCCTCAGTGGTAGAAAATAAGAAAACCTCAGATGCTTCAA
AGCGGGCCTGCAACTTGACTGATACCCAGAAGGAAGTGAAGGAGATGGTGATGGGGTTAAATGTGCTAGA
TCCCCATACTTCTCACTCCTGGCTTTGTGATGGGAGGCTTCTGTGTCTCCATGACCCCAGCAACAAAAAC
AATTGGAAGATCTTCCGGGAGTGTTGGAAGCAAGGTCAGCCAGTGCTGGTTTCGGGGGTACATAAAAAGC
TCAAGTCTGAGCTCTGGAAGCCAGAAGCCTTTAGCCAGGAATTTGGAGACCAGGATGTAGACTTGGTGAA
CTGCAGGAACTGTGCTATAATTTCCGATGTGAAAGTTCGGGATTTCTGGGATGGTTTCGAGATCATATGC
AAACGACTACGGTCAGAAGATGGGCAGCCAATGGTGCTCAAACTCAAGGACTGGCCTCCTGGGGAAGATT
TTCGAGACATGATGCCAACCAGGTTTGAAGATCTGATGGAGAACCTTCCTCTGCCAGAATATACCAAACG
AGATGGCAGGCTCAATCTGGCCTCTAGGCTACCTAGCTACTTTGTAAGGCCTGATCTGGGCCCCAAGATG
TACAACGCCTATGGGTTGATAACAGCAGAAGATAGAAGAGTTGGTACAACAAATCTTCACTTAGATGTGT
CTGATGCTGTTAATGTGATGGTGTATGTTGGGATTCCCATCGGGGAGGGTGCTCATGATGAAGAGGTACT
CAAGACAATTGACGAGGGAGATGCCGATGAGGTGACGAAGCAGAGGATTCATGATGGAAAAGAGAAGCCA
GGTGCTTTATGGCACATCTATGCAGCCAAGGATGCAGAGAAGATCCGGGAGCTGCTCCGAAAGGTTGGAG
AAGAACAAGGCCAAGAGAACCCCCCTGATCATGACCCAATTCATGACCAAAGTTGGTACCTGGACCAGAC
CCTCCGTAAGCGACTCTATGAGGAGTATGGCGTGCAAGGCTGGGCTATTGTGCAGTTCCTAGGTGATGCT
GTTTTCATACCTGCTGGAGCCCCACACCAGGTTCACAATCTATACAGTTGCATAAAAGTAGCAGAAGACT
TTGTATCTCCAGAACATGTAAAGCACTGTTTCCGCCTGACTCAGGAATTCAGGCATCTCTCTAACACTCA
TACAAATCATGAGGATAAACTGCAGGTGAAGAACATCATTTACCATGCAGTGAAAGATGCGGTTGGCACC
CTCAAGGCTCATGAATCCAAACTGGCAAGGTCCTAG

Translation (1761 aa):
MADAAASPVGKRLLLLFADTAASASASAPAAAAASGDPGPALRTRAWRAGTVRAMSGAVPQDLAIFVEFD
GCNWKQHSWVKVHAEEVIVLLLEGSLVWAPREDPVLLQGIRVSIAQWPALTFTPLVDKLGLGSVVPVEYL
LDRELRFLSDANGLHLFQMGTDSQNQILLEHAALRETVNALISDQKLQEIFSRGPYSVQGHRVKIYQPEG
EEGWLYGVVSHQDSITRLMEVSVTESGEIKSVDPRLIHVMLMDNSAPQSEGGTLKAVKSSKGKKKRESIE
GKDGRRRKSASDSGCDPASKKLKGDRGEVDSNGSDGGEASRGPWKGGNASGEPGLDQRAKQPPSTFVPQI
NRNIRFATYTKENGRTLVVQDEPVGGDTPASFTPYSTATGQTPLAPEVGGAENKEAGKTLEQVGQGIVAS
AAVVTTASSTPNTVRISDTGLAAGTVPEKQKGSRSQASGENSRNSILASSGFGAPLPSSSQPLTFGSGRS
QSNGVLATENKPLGFSFGCSSAQEAQKDTDLSKNLFFQCMSQTLPTSNYFTTVSESLADDSSSRDSFKQS
LESLSSGLCKGRSVLGTDTKPGSKAGSSVDRKVPAESMPTLTPAFPRSLLNARTPENHENLFLQPPKLSR
EEPSNPFLAFVEKVEHSPFSSFASQASGSSSSATTVTSKVAPSWPESHSSADSASLAKKKPLFITTDSSK
LVSGVLGSALTSGGPSLSAMGNGRSSSPTSSLTQPIEMPTLSSSPTEERPTVGPGQQDNPLLKTFSNVFG
RHSGGFLSSPADFSQENKAPFEAVKRFSLDERSLACRQDSDSSTNSDLSDLSDSEEQLQAKTGLKGIPEH
LMGKLGPNGERSAELLLGKSKGKQAPKGRPRTAPLKVGQSVLKDVSKVKKLKQSGEPFLQDGSCINVAPH
LHKCRECRLERYRKFKEQEQDDSTVACRFFHFRRLIFTRKGVLRVEGFLSPQQSDPDAMNLWIPSSSLAE
GIDLETSKYILANVGDQFCQLVMSEKEAMMMVEPHQKVAWKRAVRGVREMCDVCETTLFNIHWVCRKCGF
GVCLDCYRLRKSRPRSETEEMGDEEVFSWLKCAKGQSHEPENLMPTQIIPGTALYNIGDMVHAARGKWGI
KANCPCISRQNKSVLRPAVTNGMSQLPSINPSASSGNETTFSGGGGPAPVTTPEPDHVPKADSTDIRSEE
PLKTDSSASNSNSELKAIRPPCPDTAPPSSALHWLADLATQKAKEETKEAGSLRSVLNKESHSPFGLDSF
NSTAKVSPLTPKLFNSLLLGPTASNNKTEGSSLRDLLHSGPGKLPQTPLDTGIPFPPVFSTSSAGVKSKA
SLPNFLDHIIASVVENKKTSDASKRACNLTDTQKEVKEMVMGLNVLDPHTSHSWLCDGRLLCLHDPSNKN
NWKIFRECWKQGQPVLVSGVHKKLKSELWKPEAFSQEFGDQDVDLVNCRNCAIISDVKVRDFWDGFEIIC
KRLRSEDGQPMVLKLKDWPPGEDFRDMMPTRFEDLMENLPLPEYTKRDGRLNLASRLPSYFVRPDLGPKM
YNAYGLITAEDRRVGTTNLHLDVSDAVNVMVYVGIPIGEGAHDEEVLKTIDEGDADEVTKQRIHDGKEKP
GALWHIYAAKDAEKIRELLRKVGEEQGQENPPDHDPIHDQSWYLDQTLRKRLYEEYGVQGWAIVQFLGDA
VFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVKDAVGT
LKAHESKLARS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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