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Report for CCDS34265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34265.1 Public Homo sapiens 5 LARS1 24 110 108 CCDS HistoryNCBI Gene:51520Re-query CCDS DB by CCDS ID:34265.1Re-query CCDS DB by GeneID:51520See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34265.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394434.7 ENSP00000377954.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394434.7Link to Ensembl Protein Viewer:ENSP00000377954.2Re-query CCDS DB by Nucleotide ID:ENST00000394434Re-query CCDS DB by Protein ID:ENSP00000377954
Original member Current member NCBI NM_020117.11 NP_064502.9 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020117.11Link to Protein Sequence:NP_064502.9Re-query CCDS DB by Nucleotide ID:NM_020117Re-query CCDS DB by Protein ID:NP_064502Link to BLAST:NP_064502.9

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064502.9 1176 Q9P2J5-1 1176 100% 0 0

Chromosomal Locations for CCDS 34265.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 146114106 146114311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146120371 146120503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146122492 146122587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146123982 146124086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146126435 146126545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146128672 146128782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146128978 146129118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146130018 146130158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146131019 146131109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146132898 146133081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146135601 146135664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146140204 146140261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146142872 146143084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146143412 146143550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146144267 146144349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146144472 146144537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146144624 146144709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146149622 146149699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146151862 146152002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146153174 146153227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146153734 146153810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146153893 146153980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146157403 146157628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146157728 146157795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146159407 146159470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146160374 146160486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146164310 146164471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146168128 146168265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146171910 146171990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146172687 146172774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146177547 146177665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146182488 146182493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3531 nt):
ATGGCGGAAAGAAAAGGAACAGCCAAAGTGGACTTTTTGAAGAAGATTGAGAAAGAAATCCAACAGAAAT
GGGATACTGAGAGAGTGTTTGAGGTCAATGCATCTAATTTAGAGAAACAGACCAGCAAGGGCAAGTATTT
TGTAACCTTCCCATATCCATATATGAATGGACGCCTTCATTTGGGACACACGTTTTCTTTATCCAAATGT
GAGTTTGCTGTAGGGTACCAGCGATTGAAAGGAAAATGTTGTCTGTTTCCCTTTGGCCTGCACTGTACTG
GAATGCCTATTAAGGCATGTGCTGATAAGTTGAAAAGAGAAATAGAGCTGTATGGTTGCCCCCCTGATTT
TCCAGATGAAGAAGAGGAAGAGGAAGAAACCAGTGTTAAAACAGAAGATATAATAATTAAGGATAAAGCT
AAAGGAAAAAAGAGTAAAGCTGCTGCTAAAGCTGGATCTTCTAAATACCAGTGGGGCATTATGAAATCCC
TTGGCCTGTCTGATGAAGAGATAGTAAAATTTTCTGAAGCAGAACATTGGCTTGATTATTTCCCGCCACT
GGCTATTCAGGATTTAAAAAGAATGGGTTTGAAGGTAGACTGGCGTCGTTCCTTCATCACCACTGATGTT
AATCCTTACTATGATTCATTTGTCAGATGGCAATTTTTAACATTAAGAGAAAGAAACAAAATTAAATTTG
GGAAGCGGTATACAATTTACTCTCCGAAAGATGGACAGCCTTGCATGGATCATGATAGACAAACTGGAGA
GGGTGTTGGACCTCAGGAATATACTTTACTCAAATTGAAGGTGCTTGAGCCATACCCATCTAAATTAAGT
GGCCTGAAAGGTAAAAATATTTTCTTGGTGGCTGCTACTCTCAGACCTGAGACCATGTTTGGGCAGACAA
ATTGTTGGGTTCGTCCTGATATGAAGTACATTGGATTTGAGACGGTGAATGGTGATATATTCATCTGTAC
CCAAAAAGCAGCCAGGAATATGTCATACCAGGGCTTTACCAAAGACAATGGCGTGGTGCCTGTTGTTAAG
GAATTAATGGGGGAGGAAATTCTTGGTGCATCACTTTCTGCACCTTTAACATCATACAAGGTGATCTATG
TTCTCCCAATGCTAACTATTAAGGAGGATAAAGGCACTGGTGTGGTTACAAGTGTTCCTTCCGACTCCCC
TGATGATATTGCTGCCCTCAGAGACTTGAAGAAAAAGCAAGCCTTACGAGCAAAATATGGAATTAGAGAT
GACATGGTCTTGCCATTTGAGCCGGTGCCAGTCATTGAAATCCCAGGTTTTGGAAATCTTTCTGCTGTAA
CCATTTGTGATGAGTTGAAAATTCAGAGCCAGAATGACCGGGAAAAACTTGCAGAAGCAAAGGAGAAGAT
ATATCTAAAAGGATTTTATGAGGGTATCATGTTGGTGGATGGATTTAAAGGACAGAAGGTTCAAGATGTA
AAGAAGACTATTCAGAAAAAGATGATTGACGCTGGAGATGCACTTATTTACATGGAACCAGAGAAACAAG
TGATGTCCAGGTCGTCAGATGAATGTGTTGTGGCTCTGTGTGACCAGTGGTACTTGGATTATGGAGAAGA
GAATTGGAAGAAACAGACATCTCAGTGCTTGAAGAACCTGGAAACATTCTGTGAGGAGACCAGGAGGAAT
TTTGAAGCCACCTTAGGTTGGCTACAAGAACATGCTTGCTCAAGAACTTATGGTCTAGGCACTCACCTGC
CTTGGGATGAGCAGTGGCTGATTGAATCACTTTCTGACTCCACTATTTACATGGCATTTTACACAGTTGC
ACACCTATTGCAGGGGGGTAACTTGCATGGACAGGCAGAGTCTCCGCTGGGCATTAGACCGCAACAGATG
ACCAAGGAAGTTTGGGATTATGTTTTCTTCAAGGAGGCTCCATTTCCTAAGACTCAGATTGCAAAGGAAA
AATTAGATCAGTTAAAGCAGGAGTTTGAATTCTGGTATCCTGTTGATCTTCGCGTCTCTGGCAAGGATCT
TGTTCCAAATCATCTTTCATATTACCTTTATAATCATGTGGCTATGTGGCCGGAACAAAGTGACAAATGG
CCTACAGCTGTGAGAGCAAATGGACATCTCCTCCTGAACTCTGAGAAGATGTCAAAATCCACAGGCAACT
TCCTCACTTTGACCCAAGCTATTGACAAATTTTCAGCAGATGGAATGCGTTTGGCTCTGGCTGATGCTGG
TGACACTGTAGAAGATGCCAACTTTGTGGAAGCCATGGCAGATGCAGGTATTCTCCGTCTGTACACCTGG
GTAGAGTGGGTGAAAGAAATGGTTGCCAACTGGGACAGCCTAAGAAGTGGTCCTGCCAGCACTTTCAATG
ATAGAGTTTTTGCCAGTGAATTGAATGCAGGAATTATAAAAACAGATCAAAACTATGAAAAGATGATGTT
TAAAGAAGCTTTGAAAACAGGGTTTTTTGAGTTTCAGGCCGCAAAAGATAAGTACCGTGAATTGGCTGTG
GAAGGGATGCACAGAGAACTTGTGTTCCGGTTTATTGAAGTTCAGACACTTCTCCTCGCTCCATTCTGTC
CACATTTGTGTGAGCACATCTGGACACTCCTGGGAAAGCCTGACTCAATTATGAATGCTTCATGGCCTGT
GGCAGGTCCTGTTAATGAAGTTTTAATACACTCCTCACAGTATCTTATGGAAGTAACACATGACCTTAGA
CTACGACTCAAGAACTATATGATGCCAGCTAAAGGGAAGAAGACTGACAAACAACCCCTGCAGAAGCCCT
CACATTGCACCATCTATGTGGCAAAGAACTATCCACCTTGGCAACATACCACCCTGTCTGTTCTACGTAA
ACACTTTGAGGCCAATAACGGAAAACTGCCTGACAACAAAGTCATTGCTAGTGAACTAGGCAGTATGCCA
GAACTGAAGAAATACATGAAGAAAGTCATGCCATTTGTTGCCATGATTAAGGAAAATCTGGAGAAGATGG
GGCCTCGTATTCTGGATTTGCAATTAGAATTTGATGAAAAGGCTGTGCTTATGGAGAATATAGTCTATCT
GACTAATTCGCTTGAGCTAGAACACATAGAAGTCAAGTTTGCCTCCGAAGCAGAAGATAAAATCAGGGAA
GACTGCTGTCCTGGGAAACCACTTAATGTTTTTAGAATAGAACCTGGTGTGTCCGTTTCTCTGGTGAATC
CCCAGCCATCCAATGGCCACTTCTCAACCAAAATTGAAATCAGGCAAGGAGATAACTGTGATTCCATAAT
CAGGCGTTTAATGAAAATGAATCGAGGAATTAAAGACCTTTCCAAAGTGAAACTGATGAGATTTGATGAT
CCACTGTTGGGGCCTCGACGAGTTCCTGTCCTGGGAAAGGAGTACACCGAGAAGACCCCCATTTCTGAGC
ATGCTGTTTTCAATGTGGACCTCATGAGCAAGAAAATTCATCTGACTGAGAATGGGATAAGGGTGGATAT
TGGCGATACAATAATCTATCTGGTTCATTAA

Translation (1176 aa):
MAERKGTAKVDFLKKIEKEIQQKWDTERVFEVNASNLEKQTSKGKYFVTFPYPYMNGRLHLGHTFSLSKC
EFAVGYQRLKGKCCLFPFGLHCTGMPIKACADKLKREIELYGCPPDFPDEEEEEEETSVKTEDIIIKDKA
KGKKSKAAAKAGSSKYQWGIMKSLGLSDEEIVKFSEAEHWLDYFPPLAIQDLKRMGLKVDWRRSFITTDV
NPYYDSFVRWQFLTLRERNKIKFGKRYTIYSPKDGQPCMDHDRQTGEGVGPQEYTLLKLKVLEPYPSKLS
GLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVK
ELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRD
DMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKVQDV
KKTIQKKMIDAGDALIYMEPEKQVMSRSSDECVVALCDQWYLDYGEENWKKQTSQCLKNLETFCEETRRN
FEATLGWLQEHACSRTYGLGTHLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGNLHGQAESPLGIRPQQM
TKEVWDYVFFKEAPFPKTQIAKEKLDQLKQEFEFWYPVDLRVSGKDLVPNHLSYYLYNHVAMWPEQSDKW
PTAVRANGHLLLNSEKMSKSTGNFLTLTQAIDKFSADGMRLALADAGDTVEDANFVEAMADAGILRLYTW
VEWVKEMVANWDSLRSGPASTFNDRVFASELNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKYRELAV
EGMHRELVFRFIEVQTLLLAPFCPHLCEHIWTLLGKPDSIMNASWPVAGPVNEVLIHSSQYLMEVTHDLR
LRLKNYMMPAKGKKTDKQPLQKPSHCTIYVAKNYPPWQHTTLSVLRKHFEANNGKLPDNKVIASELGSMP
ELKKYMKKVMPFVAMIKENLEKMGPRILDLQLEFDEKAVLMENIVYLTNSLELEHIEVKFASEAEDKIRE
DCCPGKPLNVFRIEPGVSVSLVNPQPSNGHFSTKIEIRQGDNCDSIIRRLMKMNRGIKDLSKVKLMRFDD
PLLGPRRVPVLGKEYTEKTPISEHAVFNVDLMSKKIHLTENGIRVDIGDTIIYLVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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