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Report for CCDS3427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3427.1 Public Homo sapiens 4 PACRGL 24 110 108 CCDS HistoryNCBI Gene:133015Re-query CCDS DB by CCDS ID:3427.1Re-query CCDS DB by GeneID:133015See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3427.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295290.12 ENSP00000295290.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000295290.12Link to Ensembl Protein Viewer:ENSP00000295290.8Re-query CCDS DB by Nucleotide ID:ENST00000295290Re-query CCDS DB by Protein ID:ENSP00000295290
Original member Current member EBI ENST00000360916.9 ENSP00000354171.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360916.9Link to Ensembl Protein Viewer:ENSP00000354171.4Re-query CCDS DB by Nucleotide ID:ENST00000360916Re-query CCDS DB by Protein ID:ENSP00000354171
Original member Current member EBI ENST00000467997.6 ENSP00000423477.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000467997.6Link to Ensembl Protein Viewer:ENSP00000423477.1Re-query CCDS DB by Nucleotide ID:ENST00000467997Re-query CCDS DB by Protein ID:ENSP00000423477
Original member Current member EBI ENST00000506702.5 ENSP00000423536.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506702.5Link to Ensembl Protein Viewer:ENSP00000423536.1Re-query CCDS DB by Nucleotide ID:ENST00000506702Re-query CCDS DB by Protein ID:ENSP00000423536
Original member Current member EBI ENST00000507634.5 ENSP00000425938.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507634.5Link to Ensembl Protein Viewer:ENSP00000425938.1Re-query CCDS DB by Nucleotide ID:ENST00000507634Re-query CCDS DB by Protein ID:ENSP00000425938
Original member Current member NCBI NM_145048.5 NP_659485.1 Accepted alive Link to Nucleotide Sequence:NM_145048.5Link to Protein Sequence:NP_659485.1Re-query CCDS DB by Nucleotide ID:NM_145048Re-query CCDS DB by Protein ID:NP_659485Link to BLAST:NP_659485.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659485.1 221 Q8N7B6-2 221 100% 0 0

Chromosomal Locations for CCDS 3427.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 20704482 20704533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20704660 20704814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20707803 20707870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20709683 20709773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20712788 20712922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20713432 20713539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20727285 20727341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGCAGAAATCAGAGGGCTCTGGAGGTACACAGTTGAAAAACAGAGCAACAGGTAACTATGATCAAAGGA
CATCATCAAGCACACAGTTAAAACACAGGAATGCAGTTCAGGGAAGCAAATCCTCATTGTCAACCAGTTC
TCCAGAGTCTGCAAGAAAACTTCATCCTAGACCAAGTGATAAACTGAACCCTAAAACAATTAATCCGTTT
GGTGAACAGTCACGAGTGCCTTCTGCATTTGCAGCTATTTACTCTAAAGGAGGTATTCCTTGCAGATTGG
TACATGGTTCAGTAAAACACAGATTACAGTGGGAATGTCCTCCTGAAAGTCTTTCATTTGATCCACTTCT
TATTACTTTAGCTGAGGGTCTGAGAGAGACTAAGCATCCATACACTTTTGTGTCAAAGGAGGGTTTTAGA
GAATTACTTTTGGTCAAAGGTGCTCCTGAAAAAGCTATTCCTTTGCTACCTAGACTGATTCCTGTGCTAA
AGGCAGCTCTGGTCCATTCGGATGATGAAGTGTTTGAAAGAGGATTGAATGCTCTAGTTCAGCTAAGTGT
CGTTGTTGGTCCTTCTCTAAACGACCATCTGAAGCATCTGCTTACAAGCGGGAGCCTTAGCATCATCAAA
TCTAAAATTCCAACATACTGCTCCATATGCTGTTGA

Translation (221 aa):
MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLNPKTINPF
GEQSRVPSAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITLAEGLRETKHPYTFVSKEGFR
ELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALVQLSVVVGPSLNDHLKHLLTSGSLSIIK
SKIPTYCSICC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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