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Report for CCDS3432.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3432.2 Public Homo sapiens 4 SEPSECS 24 110 108 CCDS HistoryNCBI Gene:51091Re-query CCDS DB by CCDS ID:3432.2Re-query CCDS DB by GeneID:51091See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 3432.1
The coding region has been updated to represent an alternative splicing pattern in the 5' CDS, resulting in an extended protein N-terminus that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3432.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382103.7 ENSP00000371535.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382103.7Link to Ensembl Protein Viewer:ENSP00000371535.2Re-query CCDS DB by Nucleotide ID:ENST00000382103Re-query CCDS DB by Protein ID:ENSP00000371535
Original member Current member NCBI NM_016955.4 NP_058651.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016955.4Link to Protein Sequence:NP_058651.3Re-query CCDS DB by Nucleotide ID:NM_016955Re-query CCDS DB by Protein ID:NP_058651Link to BLAST:NP_058651.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058651.3 501 Q9HD40-1 501 100% 0 0

Chromosomal Locations for CCDS 3432.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 25123931 25124225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25125694 25125784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25127264 25127357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25144774 25144865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25145004 25145133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25151960 25152062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25154998 25155151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25156037 25156195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25156856 25156974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25158953 25159107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25160256 25160369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGAACCGCGAGAGCTTCGCGGCGGGAGAGCGGCTGGTGTCGCCGGCTTACGTGCGGCAGGGCTGTGAGG
CCCGCCGCTCGCATGAGCACCTCATACGGCTGCTTCTGGAGAAGGGCAAGTGTCCAGAGAATGGCTGGGA
TGAAAGTACACTTGAACTCTTTTTACATGAACTTGCAATCATGGACAGCAACAATTTCTTAGGCAATTGT
GGTGTGGGAGAAAGGGAAGGGAGAGTGGCATCCGCACTGGTTGCTCGTCGTCATTACAGGTTCATTCATG
GCATTGGACGATCCGGTGATATTTCTGCTGTGCAACCAAAAGCTGCAGGCTCTAGCCTTTTGAACAAAAT
TACCAATTCTTTGGTCCTGGACATTATAAAGCTGGCTGGTGTCCATACAGTAGCCAACTGCTTTGTAGTT
CCTATGGCAACTGGTATGAGTCTAACTCTGTGTTTCTTAACATTACGACACAAAAGACCAAAGGCAAAGT
ATATTATATGGCCACGAATAGACCAGAAGTCCTGCTTTAAATCCATGATCACTGCAGGTTTTGAGCCTGT
GGTGATAGAAAATGTTTTGGAAGGTGACGAGCTGCGTACAGACCTGAAAGCAGTGGAGGCTAAAGTCCAG
GAACTTGGGCCTGATTGCATTCTGTGTATTCATTCTACTACATCCTGTTTTGCTCCAAGGGTGCCTGATA
GATTAGAAGAACTGGCTGTGATTTGTGCTAATTATGACATTCCACATATAGTTAATAATGCTTATGGAGT
GCAGTCTTCAAAGTGTATGCATCTCATTCAGCAGGGGGCTCGAGTTGGTAGAATAGATGCTTTTGTTCAG
AGCTTGGACAAAAATTTTATGGTTCCAGTAGGTGGTGCTATAATTGCTGGCTTTAATGATTCATTCATTC
AGGAAATCAGCAAGATGTATCCAGGAAGAGCTTCAGCTTCACCTTCTTTAGATGTCCTTATTACTTTATT
GTCACTTGGATCAAATGGCTATAAGAAGCTACTAAAAGAAAGAAAGGAAATGTTTTCATATTTGTCCAAC
CAAATAAAGAAGTTGTCAGAAGCCTACAATGAAAGACTGTTGCATACACCTCACAATCCCATATCTTTAG
CTATGACACTTAAAACACTAGATGAACACCGTGACAAAGCTGTCACTCAGCTTGGCTCGATGCTTTTTAC
CAGACAGGTTTCTGGAGCCAGGGTTGTGCCTCTTGGGTCCATGCAAACTGTGAGTGGCTATACTTTCAGA
GGCTTTATGTCACATACAAATAATTACCCTTGTGCTTACCTCAATGCTGCATCAGCCATCGGAATGAAGA
TGCAGGATGTGGACCTGTTCATAAAGAGACTTGACAGGTGTTTAAAGGCAGTAAGAAAAGAACGAAGTAA
AGAGAGTGATGACAATTATGACAAAACTGAAGATGTGGATATTGAAGAAATGGCTTTAAAACTAGATAAT
GTACTTCTTGACACATACCAGGATGCTTCTTCATGA

Translation (501 aa):
MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNC
GVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVV
PMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQ
ELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQ
SLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSN
QIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFR
GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDN
VLLDTYQDASS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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