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Report for CCDS34394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34394.1 Public Homo sapiens 6 HLA-B 24 110 108 CCDS HistoryNCBI Gene:3106Re-query CCDS DB by CCDS ID:34394.1Re-query CCDS DB by GeneID:3106See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34394.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000412585.7 ENSP00000399168.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000412585.7Link to Ensembl Protein Viewer:ENSP00000399168.2Re-query CCDS DB by Nucleotide ID:ENST00000412585Re-query CCDS DB by Protein ID:ENSP00000399168
Original member Current member EBI ENST00000696559.1 ENSP00000512717.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696559.1Link to Ensembl Protein Viewer:ENSP00000512717.1Re-query CCDS DB by Nucleotide ID:ENST00000696559Re-query CCDS DB by Protein ID:ENSP00000512717
Original member Current member EBI ENST00000696560.1 ENSP00000512718.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696560.1Link to Ensembl Protein Viewer:ENSP00000512718.1Re-query CCDS DB by Nucleotide ID:ENST00000696560Re-query CCDS DB by Protein ID:ENSP00000512718
Original member Current member EBI ENST00000696561.1 ENSP00000512719.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696561.1Link to Ensembl Protein Viewer:ENSP00000512719.1Re-query CCDS DB by Nucleotide ID:ENST00000696561Re-query CCDS DB by Protein ID:ENSP00000512719
Original member Current member EBI ENST00000696562.1 ENSP00000512720.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696562.1Link to Ensembl Protein Viewer:ENSP00000512720.1Re-query CCDS DB by Nucleotide ID:ENST00000696562Re-query CCDS DB by Protein ID:ENSP00000512720
Original member Current member NCBI NM_005514.8 NP_005505.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005514.8Link to Protein Sequence:NP_005505.2Re-query CCDS DB by Nucleotide ID:NM_005514Re-query CCDS DB by Protein ID:NP_005505Link to BLAST:NP_005505.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005505.2 362 P01889 362 100% 0 0

Chromosomal Locations for CCDS 34394.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31354483 31354526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31354633 31354665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31355107 31355223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31355317 31355592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31356167 31356442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31356688 31356957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31357086 31357158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGCTGGTCATGGCGCCCCGAACCGTCCTCCTGCTGCTCTCGGCGGCCCTGGCCCTGACCGAGACCTGGG
CCGGCTCCCACTCCATGAGGTATTTCTACACCTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCAT
CTCAGTGGGCTACGTGGACGACACCCAGTTCGTGAGGTTCGACAGCGACGCCGCGAGTCCGAGAGAGGAG
CCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCGGAACACACAGATCTACAAGGCCC
AGGCACAGACTGACCGAGAGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGGTCTCA
CACCCTCCAGAGCATGTACGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGCATGACCAGTAC
GCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACGGCGG
CTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGCGGAGAGCCTACCTGGAGGGCGA
GTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGACAAGCTGGAGCGCGCTGACCCCCCAAAG
ACACACGTGACCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGTTTCTACC
CTGCGGAGATCACACTGACCTGGCAGCGGGATGGCGAGGACCAAACTCAGGACACTGAGCTTGTGGAGAC
CAGACCAGCAGGAGATAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAAGAGCAGAGA
TACACATGCCATGTACAGCATGAGGGGCTGCCGAAGCCCCTCACCCTGAGATGGGAGCCGTCTTCCCAGT
CCACCGTCCCCATCGTGGGCATTGTTGCTGGCCTGGCTGTCCTAGCAGTTGTGGTCATCGGAGCTGTGGT
CGCTGCTGTGATGTGTAGGAGGAAGAGTTCAGGTGGAAAAGGAGGGAGCTACTCTCAGGCTGCGTGCAGC
GACAGTGCCCAGGGCTCTGATGTGTCTCTCACAGCTTGA

Translation (362 aa):
MLVMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREE
PRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHDQY
AYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENGKDKLERADPPK
THVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQR
YTCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSYSQAACS
DSAQGSDVSLTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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