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Report for CCDS3444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3444.1 Public Homo sapiens 4 KLF3 24 110 108 CCDS HistoryNCBI Gene:51274Re-query CCDS DB by CCDS ID:3444.1Re-query CCDS DB by GeneID:51274See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3444.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261438.10 ENSP00000261438.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261438.10Link to Ensembl Protein Viewer:ENSP00000261438.5Re-query CCDS DB by Nucleotide ID:ENST00000261438Re-query CCDS DB by Protein ID:ENSP00000261438
Original member Current member NCBI NM_016531.6 NP_057615.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016531.6Link to Protein Sequence:NP_057615.3Re-query CCDS DB by Nucleotide ID:NM_016531Re-query CCDS DB by Protein ID:NP_057615Link to BLAST:NP_057615.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057615.3 345 P57682-1 345 100% 0 0

Chromosomal Locations for CCDS 3444.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 38680626 38680682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38688585 38689071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38689729 38689879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38694746 38694906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38697082 38697263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGCTCATGTTTGACCCAGTTCCTGTCAAGCAAGAGGCCATGGACCCTGTCTCAGTGTCATACCCATCTA
ATTACATGGAATCCATGAAGCCTAACAAGTATGGGGTCATCTACTCCACACCATTGCCTGAGAAGTTCTT
TCAGACCCCAGAAGGTCTGTCGCACGGAATACAGATGGAGCCAGTGGACCTCACGGTGAACAAGCGGAGT
TCACCCCCTTCGGCTGGGAATTCGCCCTCCTCTCTGAAGTTCCCGTCCTCACACCGGAGAGCCTCGCCTG
GGTTGAGCATGCCTTCTTCCAGCCCACCGATAAAAAAATACTCACCCCCTTCTCCAGGCGTGCAGCCCTT
CGGCGTGCCGCTGTCCATGCCACCAGTGATGGCAGCTGCCCTCTCGCGGCATGGAATACGGAGCCCGGGG
ATCCTGCCCGTCATCCAGCCGGTGGTGGTGCAGCCCGTCCCCTTTATGTACACAAGTCACCTCCAGCAGC
CTCTCATGGTCTCCTTATCGGAGGAGATGGAAAATTCCAGTAGTAGCATGCAAGTACCTGTAATTGAATC
ATATGAGAAGCCTATATCACAGAAAAAAATTAAAATAGAACCTGGGATCGAACCACAGAGGACAGATTAT
TATCCTGAAGAAATGTCACCCCCCTTAATGAACTCAGTGTCCCCCCCGCAAGCATTGTTGCAAGAGAATC
ACCCTTCGGTCATCGTGCAGCCTGGGAAGAGACCTTTACCTGTGGAATCCCCGGATACTCAAAGGAAGCG
GAGGATACACAGATGTGATTATGATGGATGCAACAAAGTGTACACTAAAAGCTCCCACTTGAAAGCACAC
AGAAGAACACACACAGGAGAAAAACCCTACAAATGTACATGGGAAGGGTGCACATGGAAGTTTGCTCGGT
CTGATGAACTAACAAGACATTTCCGAAAACATACTGGAATCAAACCTTTCCAGTGCCCGGACTGTGACCG
CAGCTTCTCCCGTTCTGACCATCTTGCCCTCCATAGGAAACGCCACATGCTAGTCTGA

Translation (345 aa):
MLMFDPVPVKQEAMDPVSVSYPSNYMESMKPNKYGVIYSTPLPEKFFQTPEGLSHGIQMEPVDLTVNKRS
SPPSAGNSPSSLKFPSSHRRASPGLSMPSSSPPIKKYSPPSPGVQPFGVPLSMPPVMAAALSRHGIRSPG
ILPVIQPVVVQPVPFMYTSHLQQPLMVSLSEEMENSSSSMQVPVIESYEKPISQKKIKIEPGIEPQRTDY
YPEEMSPPLMNSVSPPQALLQENHPSVIVQPGKRPLPVESPDTQRKRRIHRCDYDGCNKVYTKSSHLKAH
RRTHTGEKPYKCTWEGCTWKFARSDELTRHFRKHTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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