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Report for CCDS34443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34443.1 Public Homo sapiens 6 LRFN2 24 110 108 CCDS HistoryNCBI Gene:57497Re-query CCDS DB by CCDS ID:34443.1Re-query CCDS DB by GeneID:57497See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34443.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338305.7 ENSP00000345985.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338305.7Link to Ensembl Protein Viewer:ENSP00000345985.6Re-query CCDS DB by Nucleotide ID:ENST00000338305Re-query CCDS DB by Protein ID:ENSP00000345985
Original member Current member NCBI NM_020737.3 NP_065788.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020737.3Link to Protein Sequence:NP_065788.1Re-query CCDS DB by Nucleotide ID:NM_020737Re-query CCDS DB by Protein ID:NP_065788Link to BLAST:NP_065788.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065788.1 789 Q9ULH4 789 100% 0 0

Chromosomal Locations for CCDS 34443.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 40391943 40392912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40431714 40433113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2370 nt):
ATGGAGACCCTGCTTGGTGGCCTGCTAGCGTTTGGCATGGCGTTTGCCGTGGTCGACGCCTGCCCCAAGT
ACTGTGTCTGCCAGAATCTGTCTGAGTCACTGGGGACCCTGTGCCCCTCCAAGGGGCTGCTCTTTGTACC
CCCTGATATTGACCGGCGGACAGTGGAGCTGCGCCTGGGCGGCAACTTCATCATCCACATCAGCCGCCAG
GACTTTGCCAACATGACGGGGCTGGTGGACCTGACCCTGTCCAGGAACACCATCAGCCACATCCAGCCCT
TTTCCTTTCTGGACCTCGAGAGCCTCCGCTCCCTGCATCTTGACAGCAATCGGCTGCCAAGCCTTGGGGA
GGACACCCTCCGGGGCCTGGTCAACCTGCAGCACCTTATCGTGAACAACAACCAGCTGGGCGGCATCGCA
GATGAGGCTTTTGAGGACTTCCTGCTGACATTGGAGGATCTGGACCTCTCCTACAACAACCTCCATGGCC
TGCCGTGGGACTCCGTGCGACGCATGGTCAACCTCCACCAGCTGAGCCTGGACCACAACCTGCTGGATCA
CATCGCCGAGGGCACCTTTGCAGACCTGCAGAAACTGGCCCGCCTGGATCTCACCTCCAATCGGCTGCAG
AAGCTGCCCCCTGATCCCATCTTTGCCCGCTCCCAGGCTTCGGCTTTGACAGCCACACCCTTTGCCCCAC
CCTTGTCCTTTAGTTTTGGGGGTAACCCACTTCACTGCAATTGTGAGCTTCTCTGGCTGCGGAGGCTCGA
GCGGGACGATGACCTGGAAACCTGTGGCTCCCCAGGGGGCCTCAAGGGTCGCTACTTCTGGCATGTGCGT
GAGGAGGAGTTTGTGTGCGAGCCGCCTCTCATCACCCAGCACACACACAAGTTGCTGGTTCTGGAGGGCC
AGGCGGCCACACTCAAGTGCAAAGCCATTGGGGACCCCAGCCCCCTTATCCACTGGGTAGCCCCCGATGA
CCGCCTGGTAGGGAACTCCTCAAGGACCGCTGTCTATGACAATGGCACCCTGGACATCTTCATCACCACA
TCTCAGGACAGTGGTGCCTTCACCTGCATTGCTGCCAATGCTGCCGGAGAGGCCACGGCCATGGTGGAGG
TCTCCATCGTCCAGCTGCCACACCTCAGCAACAGCACCAGCCGCACTGCACCCCCCAAGTCCCGCCTCTC
AGACATCACTGGCTCCAGCAAGACCAGCCGGGGAGGTGGAGGCAGTGGGGGCGGAGAGCCTCCCAAAAGC
CCCCCGGAACGGGCTGTGCTTGTGTCTGAAGTGACCACCACCTCGGCCCTGGTCAAGTGGTCTGTCAGCA
AGTCAGCACCCCGGGTGAAGATGTACCAGCTGCAGTACAACTGCTCTGACGATGAGGTACTGATTTACAG
GATGATCCCAGCCTCCAACAAGGCCTTCGTGGTCAACAACCTGGTGTCAGGGACTGGCTACGACTTGTGT
GTGCTGGCCATGTGGGATGACACAGCCACGACACTCACGGCCACCAACATCGTGGGCTGCGCCCAGTTCT
TCACCAAGGCTGACTACCCGCAGTGCCAGTCCATGCACAGCCAGATTCTGGGCGGCACCATGATCCTGGT
CATCGGGGGCATCATCGTGGCCACGCTGCTGGTCTTCATCGTCATCCTCATGGTGCGCTACAAGGTCTGC
AACCACGAGGCCCCCAGCAAGATGGCAGCGGCCGTGAGCAATGTGTACTCGCAGACCAACGGCGCCCAGC
CACCGCCTCCAAGCAGCGCACCAGCCGGGGCCCCGCCGCAGGGCCCGCCGAAGGTGGTGGTGCGCAACGA
GCTCCTGGACTTCACCGCCAGCCTGGCCCGCGCCAGTGACTCCTCTTCCTCCAGCTCCCTGGGCAGTGGG
GAGGCTGCGGGGCTGGGACGGGCCCCCTGGAGGATCCCACCCTCCGCCCCGCGCCCCAAGCCCAGCCTTG
ACCGCCTGATGGGGGCCTTCGCCTCCCTGGACCTCAAGAGTCAGAGAAAGGAGGAGCTGCTGGACTCCAG
GACTCCAGCCGGGAGAGGGGCTGGGACGTCGGCCCGGGGCCACCACTCGGACCGAGAGCCACTGCTGGGG
CCCCCTGCGGCCCGGGCCAGGAGCCTGCTCCCCTTGCCGTTGGAGGGCAAGGCCAAACGCAGCCACTCCT
TCGACATGGGGGACTTTGCTGCTGCGGCGGCGGGAGGGGTCGTGCCGGGCGGCTACAGTCCTCCTCGGAA
GGTCTCGAACATCTGGACGAAGCGCAGCCTCTCTGTCAACGGCATGCTCTTGCCCTTTGAGGAGAGTGAC
CTGGTGGGGGCCCGGGGGACTTTTGGCAGCTCCGAATGGGTGATGGAGAGCACGGTCTAG

Translation (789 aa):
METLLGGLLAFGMAFAVVDACPKYCVCQNLSESLGTLCPSKGLLFVPPDIDRRTVELRLGGNFIIHISRQ
DFANMTGLVDLTLSRNTISHIQPFSFLDLESLRSLHLDSNRLPSLGEDTLRGLVNLQHLIVNNNQLGGIA
DEAFEDFLLTLEDLDLSYNNLHGLPWDSVRRMVNLHQLSLDHNLLDHIAEGTFADLQKLARLDLTSNRLQ
KLPPDPIFARSQASALTATPFAPPLSFSFGGNPLHCNCELLWLRRLERDDDLETCGSPGGLKGRYFWHVR
EEEFVCEPPLITQHTHKLLVLEGQAATLKCKAIGDPSPLIHWVAPDDRLVGNSSRTAVYDNGTLDIFITT
SQDSGAFTCIAANAAGEATAMVEVSIVQLPHLSNSTSRTAPPKSRLSDITGSSKTSRGGGGSGGGEPPKS
PPERAVLVSEVTTTSALVKWSVSKSAPRVKMYQLQYNCSDDEVLIYRMIPASNKAFVVNNLVSGTGYDLC
VLAMWDDTATTLTATNIVGCAQFFTKADYPQCQSMHSQILGGTMILVIGGIIVATLLVFIVILMVRYKVC
NHEAPSKMAAAVSNVYSQTNGAQPPPPSSAPAGAPPQGPPKVVVRNELLDFTASLARASDSSSSSSLGSG
EAAGLGRAPWRIPPSAPRPKPSLDRLMGAFASLDLKSQRKEELLDSRTPAGRGAGTSARGHHSDREPLLG
PPAARARSLLPLPLEGKAKRSHSFDMGDFAAAAAGGVVPGGYSPPRKVSNIWTKRSLSVNGMLLPFEESD
LVGARGTFGSSEWVMESTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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