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Report for CCDS34496.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
34496.1 |
Public |
Homo sapiens |
6 |
SMIM8 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:57150](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:34496.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:57150](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 6 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 34496.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000229570.9 |
ENSP00000229570.5 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000229570.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000229570.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000229570](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000229570](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000392863.6 |
ENSP00000376603.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000392863.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000376603.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000392863](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000376603](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000608868.2 |
ENSP00000476945.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000608868.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000476945.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000608868](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000476945](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000608353.5 |
ENSP00000477133.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000608353.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000477133.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000608353](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000477133](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001042493.3 |
NP_001035958.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001042493.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001035958.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001042493](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001035958](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001035958.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_020425.6 |
NP_065158.3 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_020425.6](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_065158.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_020425](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_065158](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_065158.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 34496.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (294 nt): ATGTCTTCAGCACCTGAGCCTCCAACATTCAAAAAGGAACCACCCAAAGAGAAAGAGTTTCAAAGCCCAG GGCTCAGAGGGGTGCGCACAACAACCTTATTTCGTGCTGTGAATCCAGAGCTCTTCATTAAACCTAACAA ACCTGTAATGGCTTTCGGATTGGTAACTCTTTCACTTTGCGTGGCATATATTGGTTATCTACATGCAATA CAAGAGAATAAAAAGGACCTCTATGAAGCTATTGATAGTGAGGGGCACAGTTATATGAGGCGGAAAACAT CCAAATGGGATTAG
Translation (97 aa): MSSAPEPPTFKKEPPKEKEFQSPGLRGVRTTTLFRAVNPELFIKPNKPVMAFGLVTLSLCVAYIGYLHAI QENKKDLYEAIDSEGHSYMRRKTSKWD
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