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Report for CCDS34530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34530.1 Public Homo sapiens 6 ECHDC1 24 110 108 CCDS HistoryNCBI Gene:55862Re-query CCDS DB by CCDS ID:34530.1Re-query CCDS DB by GeneID:55862See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34530.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368289.6 ENSP00000357272.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368289.6Link to Ensembl Protein Viewer:ENSP00000357272.2Re-query CCDS DB by Nucleotide ID:ENST00000368289Re-query CCDS DB by Protein ID:ENSP00000357272
Original member Current member EBI ENST00000368291.6 ENSP00000357274.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368291.6Link to Ensembl Protein Viewer:ENSP00000357274.2Re-query CCDS DB by Nucleotide ID:ENST00000368291Re-query CCDS DB by Protein ID:ENSP00000357274
Original member Current member NCBI NM_018479.4 NP_060949.2 Accepted alive Link to Nucleotide Sequence:NM_018479.4Link to Protein Sequence:NP_060949.2Re-query CCDS DB by Nucleotide ID:NM_018479Re-query CCDS DB by Protein ID:NP_060949Link to BLAST:NP_060949.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060949.2 145 Q9NTX5-5 145 100% 0 0

Chromosomal Locations for CCDS 34530.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 127314822 127314896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127327002 127327144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127330809 127331028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGGCGAAAAGTCTTTTGAAGACAGCCTCTCTGTCTGGAAGGACAAAATTGCTACATCAAACAGGATTGT
CACTTTATAGTACATCCCATGGATTTTATGAGGAAGAAGTGAAAAAAACACTTCAGCAGTTTCCTGGTGG
ATCCATTGACCTTCAGAAGGAAGACAATGGCATTGGCATTCTTACTCTGAACAATCCAAGTAGAATGAAT
GCCTTTTCAGGTGTTATGATGCTACAACTTCTGGAAAAAGTAATTGAATTGGAAAATTGGACAGAGGGGA
AAGGCCTCATTGTCCGTGGGGCAAAAAATACTTTCTCTTCAGGATCTGATCTGAATGCTGTGAAATCACT
AGGAACTCCAGAGACTTCCTTTAATAAGTGTTGCGCTGGTTCAAGGTTGGGCATTGGGTGGAGGAGCAGA
ATTTACTACAGCATGTGA

Translation (145 aa):
MAKSLLKTASLSGRTKLLHQTGLSLYSTSHGFYEEEVKKTLQQFPGGSIDLQKEDNGIGILTLNNPSRMN
AFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTPETSFNKCCAGSRLGIGWRSR
IYYSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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