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Report for CCDS34537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34537.1 Public Homo sapiens 6 L3MBTL3 24 110 108 CCDS HistoryNCBI Gene:84456Re-query CCDS DB by CCDS ID:34537.1Re-query CCDS DB by GeneID:84456See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34537.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361794.7 ENSP00000354526.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361794.7Link to Ensembl Protein Viewer:ENSP00000354526.2Re-query CCDS DB by Nucleotide ID:ENST00000361794Re-query CCDS DB by Protein ID:ENSP00000354526
Original member Current member EBI ENST00000368136.3 ENSP00000357118.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368136.3Link to Ensembl Protein Viewer:ENSP00000357118.2Re-query CCDS DB by Nucleotide ID:ENST00000368136Re-query CCDS DB by Protein ID:ENSP00000357118
Original member Current member NCBI NM_032438.4 NP_115814.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032438.4Link to Protein Sequence:NP_115814.1Re-query CCDS DB by Nucleotide ID:NM_032438Re-query CCDS DB by Protein ID:NP_115814Link to BLAST:NP_115814.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115814.1 780 Q96JM7-1 780 100% 0 0

Chromosomal Locations for CCDS 34537.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 130042700 130042801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130049282 130049393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130049756 130049830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130051249 130051408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130052859 130052991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130055171 130055255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130057406 130057497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130060036 130060140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130066353 130066488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130068330 130068421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130070976 130071127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130078558 130078634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130083620 130083705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130086140 130086250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130092745 130092859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130094265 130094367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130104426 130104575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130120879 130120958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130133452 130133621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130133843 130133905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130139610 130139753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2343 nt):
ATGACTGAATCTGCCTCTAGCACAAGTGGTCAAGAGTTTGATGTGTTCAGTGTTATGGACTGGAAAGATG
GAGTGGGCACGTTACCAGGAAGTGACTTAAAGTTTCGGGTAAATGAGTTTGGAGCCCTGGAAGTTATTAC
AGATGAGAATGAGATGGAAAATGTTAAAAAAGCAACTGCTACCACCACTTGGATGGTACCAACTGCTCAA
GAAGCCCCGACCTCTCCCCCGAGCTCCAGGCCCGTATTTCCACCTGCCTACTGGACATCTCCACCTGGAT
GTCCCACAGTCTTTTCAGAGAAGACTGGGATGCCTTTCAGGTTGAAGGATCCAGTGAAAGTAGAAGGGCT
TCAGTTCTGTGAGAACTGTTGTCAGTATGGCAACGTAGATGAGTGTCTTTCTGGAGGAAACTATTGCAGC
CAGAATTGTGCTCGGCACATCAAAGATAAAGATCAGAAGGAAGAAAGGGACGTAGAAGAAGACAATGAGG
AAGAAGATCCTAAGTGTAGTCGGAAGAAAAAACCAAAATTATCTCTGAAAGCTGACACCAAGGAGGATGG
AGAAGAGAGAGATGATGAAATGGAGAACAAACAAGATGTAAGAATCCTGAGGGGTTCGCAGAGAGCACGG
AGGAAAAGACGAGGGGATTCGGCTGTACTAAAGCAGGGTTTGCCTCCTAAAGGAAAGAAAGCGTGGTGCT
GGGCATCCTACCTGGAAGAGGAGAAAGCGGTGGCAGTGCCGGCGAAGCTGTTCAAGGAGCATCAATCCTT
TCCATATAACAAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGATCCTGAGCATCAGTCTGTG
TACTGTGTCCTCACCGTCGCGGAGGTTTGTGGATACCGGATAAAGCTTCACTTTGATGGGTATTCTGATT
GCTATGACTTCTGGGTGAATGCAGACGCTCTGGATATCCACCCAGTTGGGTGGTGTGAGAAAACCGGCCA
CAAACTCCATCCTCCAAAAGGGTATAAAGAAGAAGAATTCAATTGGCAGACCTATCTTAAGACATGTAAA
GCTCAAGCTGCTCCTAAGTCATTATTTGAAAATCAGAATATAACAGTGATCCCATCGGGCTTTCGAGTTG
GTATGAAGCTTGAGGCAGTAGACAAAAAGAATCCCTCATTCATCTGTGTTGCTACGGTAACAGATATGGT
GGACAATCGTTTCCTGGTACATTTTGACAACTGGGATGAGAGCTATGACTATTGGTGTGAAGCATCAAGT
CCACATATTCATCCAGTTGGTTGGTGTAAGGAACATAGAAGAACCCTTATTACTCCACCAGGTTATCCAA
ATGTGAAACATTTTTCTTGGGATAAATACTTAGAAGAAACCAATTCTTTACCTGCTCCTGCAAGAGCTTT
CAAAGTGAAACCTCCTCATGGATTCCAGAAAAAAATGAAGCTTGAGGTTGTAGACAAAAGGAACCCTATG
TTTATTAGAGTAGCAACTGTGGCAGACACAGATGATCACCGGGTAAAAGTTCACTTTGATGGCTGGAACA
ATTGCTATGATTACTGGATAGATGCAGATTCTCCTGATATTCACCCTGTAGGCTGGTGTTCAAAAACAGG
ACATCCCCTTCAGCCTCCTTTGAGCCCCTTAGAATTAATGGAAGCTTCAGAACATGGTGGATGCTCAACC
CCGGGATGTAAAGGGATTGGCCATTTCAAGAGAGCGAGACATCTGGGCCCTCACAGTGCTGCCAACTGTC
CCTATTCAGAAATCAATTTGAATAAAGACCGTATTTTTCCAGACCGCTTAAGTGGTGAGATGCCTCCGGC
TAGTCCGTCATTTCCAAGAAATAAAAGGACAGATGCAAATGAAAGCTCTTCTTCCCCTGAAATCAGAGAC
CAGCATGCTGATGATGTCAAAGAAGACTTTGAAGAGAGAACAGAAAGTGAAATGAGAACATCACATGAAG
CCAGAGGTGCCCGGGAAGAACCCACCGTCCAGCAGGCACAGCGTCGGTCAGCTGTCTTTCTGTCCTTTAA
GTCCCCAATTCCATGTCTGCCCTTGCGCTGGGAGCAGCAAAGCAAACTTCTTCCAACTGTCGCAGGAATC
CCTGCCAGTAAAGTTTCCAAATGGAGCACAGACGAGGTGTCAGAATTTATACAGAGCTTACCTGGGTGTG
AAGAACATGGAAAGGTATTTAAAGATGAACAAATTGATGGAGAAGCATTTCTACTTATGACTCAAACAGA
CATTGTTAAAATTATGAGCATTAAACTGGGCCCTGCTCTCAAAATTTTCAATTCCATCCTGATGTTCAAA
GCTGCAGAGAAGAATTCTCACAATGAACTTTGA

Translation (780 aa):
MTESASSTSGQEFDVFSVMDWKDGVGTLPGSDLKFRVNEFGALEVITDENEMENVKKATATTTWMVPTAQ
EAPTSPPSSRPVFPPAYWTSPPGCPTVFSEKTGMPFRLKDPVKVEGLQFCENCCQYGNVDECLSGGNYCS
QNCARHIKDKDQKEERDVEEDNEEEDPKCSRKKKPKLSLKADTKEDGEERDDEMENKQDVRILRGSQRAR
RKRRGDSAVLKQGLPPKGKKAWCWASYLEEEKAVAVPAKLFKEHQSFPYNKNGFKVGMKLEGVDPEHQSV
YCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYLKTCK
AQAAPKSLFENQNITVIPSGFRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASS
PHIHPVGWCKEHRRTLITPPGYPNVKHFSWDKYLEETNSLPAPARAFKVKPPHGFQKKMKLEVVDKRNPM
FIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGHPLQPPLSPLELMEASEHGGCST
PGCKGIGHFKRARHLGPHSAANCPYSEINLNKDRIFPDRLSGEMPPASPSFPRNKRTDANESSSSPEIRD
QHADDVKEDFEERTESEMRTSHEARGAREEPTVQQAQRRSAVFLSFKSPIPCLPLRWEQQSKLLPTVAGI
PASKVSKWSTDEVSEFIQSLPGCEEHGKVFKDEQIDGEAFLLMTQTDIVKIMSIKLGPALKIFNSILMFK
AAEKNSHNEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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