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Report for CCDS3465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3465.1 Public Homo sapiens 4 SLC30A9 24 110 108 CCDS HistoryNCBI Gene:10463Re-query CCDS DB by CCDS ID:3465.1Re-query CCDS DB by GeneID:10463See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3465.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264451.12 ENSP00000264451.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264451.12Link to Ensembl Protein Viewer:ENSP00000264451.6Re-query CCDS DB by Nucleotide ID:ENST00000264451Re-query CCDS DB by Protein ID:ENSP00000264451
Original member Current member NCBI NM_006345.4 NP_006336.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006345.4Link to Protein Sequence:NP_006336.3Re-query CCDS DB by Nucleotide ID:NM_006345Re-query CCDS DB by Protein ID:NP_006336Link to BLAST:NP_006336.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006336.3 568 Q6PML9 568 100% 0 0

Chromosomal Locations for CCDS 3465.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41990652 41990760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42001616 42001780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42018111 42018170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42020416 42020515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42022838 42022930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42023302 42023384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42035275 42035333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42038986 42039053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42049377 42049479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42060191 42060246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42062986 42063121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42065310 42065349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42066550 42066621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42067085 42067192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42070526 42070691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42075657 42075786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42078212 42078325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42086082 42086126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGTTACCCGGCTTGGCCGCCGCCGCGGCCCACAGATGTAGCTGGTCCTCCCTGTGCCGGCTCCGTCTGC
GATGCAGGGCGGCGGCCTGTAATCCCAGCGACCGCCAGGAGTGGCAGAATTTAGTGACATTTGGAAGCTT
TTCAAACATGGTTCCCTGTAGTCATCCATATATTGGTACCCTGAGTCAAGTAAAGTTGTACTCCACAAAT
GTTCAGAAAGAAGGACAGGGATCACAAACACTCAGAGTGGAAAAAGTACCATCATTTGAAACAGCAGAAG
GTATAGGCACAGAACTCAAAGCTCCACTTAAGCAAGAACCTCTCCAAGTAAGAGTTAAAGCAGTCCTTAA
GAAAAGGGAGTATGGCTCAAAGTACACTCAGAATAATTTCATCACTGGAGTCAGAGCGATAAATGAGTTC
TGCCTCAAATCCAGTGATCTAGAACAACTTCGAAAAATCAGACGACGAAGTCCCCATGAAGATACTGAGT
CTTTTACTGTATACTTGAGATCAGATGTGGAAGCAAAATCTTTGGAAGTTTGGGGAAGCCCTGAAGCTCT
TGCCAGAGAGAAAAAATTGCGTAAGGAAGCAGAAATAGAATACAGAGAAAGGCTATTTAGAAACCAAAAA
ATATTAAGAGAATACAGAGATTTCTTGGGAAATACCAAGCCACGCTCCAGAACAGCATCAGTGTTTTTTA
AGGGACCAGGAAAAGTGGTGATGGTTGCAATTTGCATCAATGGATTAAACTGCTTCTTTAAATTTCTTGC
CTGGATTTATACCGGTTCAGCAAGTATGTTCTCAGAAGCTATACACTCATTATCTGATACTTGTAATCAG
GGTTTACTAGCATTGGGCATCAGTAAGTCTGTTCAAACACCAGATCCTTCTCATCCGTACGGATTTTCAA
ATATGCGCTATATTTCTTCGCTAATTAGTGGTGTTGGTATTTTCATGATGGGTGCAGGACTATCTTGGTA
CCATGGAGTCATGGGATTGCTTCATCCTCAACCAATAGAATCCCTTCTATGGGCATATTGTATTTTAGCA
GGATCATTAGTATCTGAAGGAGCAACACTTCTTGTTGCTGTAAATGAACTTCGTAGGAATGCTCGGGCTA
AAGGAATGTCATTTTACAAGTATGTAATGGAAAGTCGTGATCCTAGTACAAATGTGATATTATTGGAGGA
TACTGCTGCAGTCTTGGGAGTTATAATAGCAGCCACTTGCATGGGCCTTACTTCTATAACAGGCAATCCA
CTGTATGACAGCCTAGGTTCTTTGGGTGTGGGCACCTTATTAGGCATGGTCTCAGCATTCCTCATCTACA
CTAACACAGAAGCACTCTTAGGGCGGTCCATCCAGCCAGAACAAGTACAACGGCTCACTGAACTCCTGGA
GAATGACCCATCAGTAAGGGCAATTCATGATGTTAAAGCCACAGATCTGGGATTAGGTAAAGTAAGATTT
AAGGCAGAAGTAGATTTTGATGGGCGAGTTGTTACAAGATCATATTTGGAAAAACAAGATTTTGACCAAA
TGTTACAAGAAATTCAAGAAGTGAAAACTCCTGAAGAACTAGAGACCTTTATGCTTAAACATGGAGAAAA
TATTATTGATACTTTAGGAGCTGAAGTAGATAGACTTGAGAAGGAACTGAAAAAACGAAATCCTGAAGTT
CGACATGTAGATTTGGAGATACTGTGA

Translation (568 aa):
MLPGLAAAAAHRCSWSSLCRLRLRCRAAACNPSDRQEWQNLVTFGSFSNMVPCSHPYIGTLSQVKLYSTN
VQKEGQGSQTLRVEKVPSFETAEGIGTELKAPLKQEPLQVRVKAVLKKREYGSKYTQNNFITGVRAINEF
CLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEIEYRERLFRNQK
ILREYRDFLGNTKPRSRTASVFFKGPGKVVMVAICINGLNCFFKFLAWIYTGSASMFSEAIHSLSDTCNQ
GLLALGISKSVQTPDPSHPYGFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILA
GSLVSEGATLLVAVNELRRNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNP
LYDSLGSLGVGTLLGMVSAFLIYTNTEALLGRSIQPEQVQRLTELLENDPSVRAIHDVKATDLGLGKVRF
KAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIIDTLGAEVDRLEKELKKRNPEV
RHVDLEIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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