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Report for CCDS3482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3482.1 Public Homo sapiens 4 SLC10A4 24 110 108 CCDS HistoryNCBI Gene:201780Re-query CCDS DB by CCDS ID:3482.1Re-query CCDS DB by GeneID:201780See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3482.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273861.5 ENSP00000273861.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000273861.5Link to Ensembl Protein Viewer:ENSP00000273861.4Re-query CCDS DB by Nucleotide ID:ENST00000273861Re-query CCDS DB by Protein ID:ENSP00000273861
Original member Current member NCBI NM_152679.4 NP_689892.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152679.4Link to Protein Sequence:NP_689892.1Re-query CCDS DB by Nucleotide ID:NM_152679Re-query CCDS DB by Protein ID:NP_689892Link to BLAST:NP_689892.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689892.1 437 Q96EP9 437 100% 0 0

Chromosomal Locations for CCDS 3482.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 48483562 48484151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48484932 48485142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48488427 48488939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGGACGGCAACGACAACGTGACCCTGCTCTTCGCCCCTCTGCTGCGGGACAACTACACCCTGGCGCCCA
ATGCCAGCAGCCTGGGCCCCGGCACGGACCTCGCCCTCGCCCCTGCCTCCAGCGCCGGCCCCGGCCCTGG
GCTCAGCCTCGGGCCGGGTCCGAGCTTCGGCTTCAGCCCCGGCCCCACTCCGACCCCGGAGCCCACGACC
AGCGGCCTCGCGGGCGGCGCGGCGAGCCACGGCCCTTCCCCGTTCCCTCGGCCCTGGGCGCCCCACGCGC
TCCCGTTCTGGGACACGCCGCTGAACCACGGGCTGAACGTGTTCGTGGGCGCCGCCCTGTGCATCACCAT
GCTGGGCCTGGGCTGCACGGTGGACGTGAACCACTTCGGGGCGCACGTCCGTCGGCCCGTGGGCGCGCTG
CTGGCAGCGCTCTGCCAGTTCGGCCTCCTGCCGCTGCTGGCCTTCCTGCTGGCCCTCGCCTTCAAGCTGG
ACGAGGTGGCCGCCGTGGCGGTGCTCCTGTGTGGCTGCTGTCCCGGCGGCAATCTCTCCAATCTTATGTC
CCTGCTGGTTGACGGCGACATGAACCTCAGCATCATCATGACCATCTCCTCCACGCTTCTGGCCCTCGTC
TTGATGCCCCTGTGCCTGTGGATCTACAGCTGGGCTTGGATCAACACCCCTATCGTGCAGTTACTACCCC
TAGGGACCGTGACCCTGACTCTCTGCAGCACTCTCATACCTATCGGGTTGGGCGTCTTCATTCGCTACAA
ATACAGCCGGGTGGCTGACTACATTGTGAAGGTTTCCCTGTGGTCTCTGCTAGTGACTCTGGTGGTCCTT
TTCATAATGACCGGCACTATGTTAGGACCTGAACTGCTGGCAAGTATCCCTGCAGCTGTTTATGTGATAG
CAATTTTTATGCCTTTGGCAGGCTACGCTTCAGGTTATGGTTTAGCTACTCTCTTCCATCTTCCACCCAA
CTGCAAGAGGACTGTATGTCTGGAAACAGGTAGTCAGAATGTGCAGCTCTGTACAGCCATTCTAAAACTG
GCCTTTCCACCGCAATTCATAGGAAGCATGTACATGTTTCCTTTGCTGTATGCACTTTTCCAGTCTGCAG
AAGCGGGGATTTTTGTTTTAATCTATAAAATGTATGGAAGTGAAATGTTGCACAAGCGAGATCCTCTAGA
TGAAGATGAAGATACAGATATTTCTTATAAAAAACTAAAAGAAGAGGAAATGGCAGACACTTCCTATGGC
ACAGTGAAAGCAGAAAATATAATAATGATGGAAACCGCTCAGACTTCTCTCTAA

Translation (437 aa):
MDGNDNVTLLFAPLLRDNYTLAPNASSLGPGTDLALAPASSAGPGPGLSLGPGPSFGFSPGPTPTPEPTT
SGLAGGAASHGPSPFPRPWAPHALPFWDTPLNHGLNVFVGAALCITMLGLGCTVDVNHFGAHVRRPVGAL
LAALCQFGLLPLLAFLLALAFKLDEVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALV
LMPLCLWIYSWAWINTPIVQLLPLGTVTLTLCSTLIPIGLGVFIRYKYSRVADYIVKVSLWSLLVTLVVL
FIMTGTMLGPELLASIPAAVYVIAIFMPLAGYASGYGLATLFHLPPNCKRTVCLETGSQNVQLCTAILKL
AFPPQFIGSMYMFPLLYALFQSAEAGIFVLIYKMYGSEMLHKRDPLDEDEDTDISYKKLKEEEMADTSYG
TVKAENIIMMETAQTSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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