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Report for CCDS34879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34879.1 Public Homo sapiens 8 ERLIN2 24 110 108 CCDS HistoryNCBI Gene:11160Re-query CCDS DB by CCDS ID:34879.1Re-query CCDS DB by GeneID:11160See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34879.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335171.10 ENSP00000335220.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335171.10Link to Ensembl Protein Viewer:ENSP00000335220.6Re-query CCDS DB by Nucleotide ID:ENST00000335171Re-query CCDS DB by Protein ID:ENSP00000335220
Original member Current member EBI ENST00000648919.1 ENSP00000497100.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648919.1Link to Ensembl Protein Viewer:ENSP00000497100.1Re-query CCDS DB by Nucleotide ID:ENST00000648919Re-query CCDS DB by Protein ID:ENSP00000497100
Original member Current member NCBI NM_001003790.4 NP_001003790.1 Accepted alive Link to Nucleotide Sequence:NM_001003790.4Link to Protein Sequence:NP_001003790.1Re-query CCDS DB by Nucleotide ID:NM_001003790Re-query CCDS DB by Protein ID:NP_001003790Link to BLAST:NP_001003790.1
Original member Current member NCBI NM_001003791.3 NP_001003791.1 Accepted alive Link to Nucleotide Sequence:NM_001003791.3Link to Protein Sequence:NP_001003791.1Re-query CCDS DB by Nucleotide ID:NM_001003791Re-query CCDS DB by Protein ID:NP_001003791Link to BLAST:NP_001003791.1
Original member Current member NCBI NM_001362880.2 NP_001349809.1 Accepted alive Link to Nucleotide Sequence:NM_001362880.2Link to Protein Sequence:NP_001349809.1Re-query CCDS DB by Nucleotide ID:NM_001362880Re-query CCDS DB by Protein ID:NP_001349809Link to BLAST:NP_001349809.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003790.1 152 O94905-2 152 100% 0 0
NP_001003791.1 152 O94905-2 152 100% 0 0
NP_001349809.1 152 O94905-2 152 100% 0 0

Chromosomal Locations for CCDS 34879.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 37737923 37738029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37740365 37740446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37741772 37741818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37744355 37744416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37744571 37744696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37745569 37745603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGGCTCAGTTGGGAGCAGTTGTGGCTGTGGCTTCCAGTTTCTTTTGTGCATCTCTCTTCTCAGCTGTGC
ACAAGATAGAAGAGGGACATATTGGGGTATATTACAGAGGCGGTGCCCTGCTGACTTCGACCAGCGGCCC
TGGTTTCCATCTCATGCTCCCTTTCATCACATCATATAAGTCTGTGCAGACCACACTCCAGACAGATGAG
GTGAAGAATGTACCTTGTGGGACTAGTGGTGGTGTGATGATCTACTTTGACAGAATTGAAGTGGTGAACT
TCCTGGTCCCGAACGCAGTGTATGATATAGTGAAGAACTATACTGCTGACTATGACAAGGCCCTCATCTT
CAACAAGATCCACCACGAACTGAACCAGTTCTGCAGTGTGCACACGCTTCAAGAGGTCTACATTGAGCTG
TTTGGACTGGAAAATGATTTTTCCCAGGAATCTTCATAA

Translation (152 aa):
MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDE
VKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIEL
FGLENDFSQESS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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