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Report for CCDS34912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34912.1 Public Homo sapiens 8 TPD52 24 110 108 CCDS HistoryNCBI Gene:7163Re-query CCDS DB by CCDS ID:34912.1Re-query CCDS DB by GeneID:7163See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34912.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379097.7 ENSP00000368391.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379097.7Link to Ensembl Protein Viewer:ENSP00000368391.3Re-query CCDS DB by Nucleotide ID:ENST00000379097Re-query CCDS DB by Protein ID:ENSP00000368391
Original member Current member NCBI NM_001025252.3 NP_001020423.1 Accepted alive Link to Nucleotide Sequence:NM_001025252.3Link to Protein Sequence:NP_001020423.1Re-query CCDS DB by Nucleotide ID:NM_001025252Re-query CCDS DB by Protein ID:NP_001020423Link to BLAST:NP_001020423.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020423.1 224 P55327-1 224 100% 0 0

Chromosomal Locations for CCDS 34912.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 80038116 80038235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80042620 80042668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80051527 80051628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80053282 80053430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80064478 80064593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80080315 80080453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGATTGTAGAGAGATGGACTTATATGAGGACTACCAGTCCCCGTTTGATTTTGATGCAGGAGTGAACA
AAAGCTATCTCTACTTGTCTCCTAGTGGAAATTCATCTCCACCCGGATCACCTACTCTTCAGAAATTTGG
TCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACC
CTCTCGGAAGAGGAGCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGT
CTCAAGTGTTAGCAGCAAAAGAGAAGCATCTAGCAGAGATCAAGCGGAAACTTGGAATCAATTCTCTACA
GGAACTAAAACAGAACATTGCCAAAGGGTGGCAAGACGTGACAGCAACATCTGCTTACAAGAAGACATCT
GAAACCTTATCCCAGGCTGGACAGAAGGCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCACCAAAA
AGCTGGAAGATGTAAAAAACTCCCCAACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGTCTAA
AGTAGGGGGAACCAAGCCTGCTGGTGGTGATTTTGGAGAAGTCTTGAATTCGGCTGCAAATGCTAGTGCC
ACCACCACGGAGCCTCTTCCAGAAAAGACACAGGAGAGCCTGTGA

Translation (224 aa):
MDCREMDLYEDYQSPFDFDAGVNKSYLYLSPSGNSSPPGSPTLQKFGLLRTDPVPEEGEDVAATISATET
LSEEEQEELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTS
ETLSQAGQKASAAFSSVGSVITKKLEDVKNSPTFKSFEEKVENLKSKVGGTKPAGGDFGEVLNSAANASA
TTTEPLPEKTQESL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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