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Report for CCDS34934.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34934.2 Public Homo sapiens 8 DCAF13 24 110 108 CCDS HistoryNCBI Gene:25879Re-query CCDS DB by CCDS ID:34934.2Re-query CCDS DB by GeneID:25879See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 34934.1
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 34934.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612750.5 ENSP00000484962.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000612750.5Link to Ensembl Protein Viewer:ENSP00000484962.1Re-query CCDS DB by Nucleotide ID:ENST00000612750Re-query CCDS DB by Protein ID:ENSP00000484962
Original member Current member NCBI NM_015420.7 NP_056235.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015420.7Link to Protein Sequence:NP_056235.5Re-query CCDS DB by Nucleotide ID:NM_015420Re-query CCDS DB by Protein ID:NP_056235Link to BLAST:NP_056235.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056235.5 445 Q9NV06-1 445 100% 0 0

Chromosomal Locations for CCDS 34934.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 103415447 103415516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103420264 103420463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103420975 103421082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103426056 103426145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103427097 103427252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103430612 103430689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103432659 103432741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103435626 103435790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103440136 103440271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103441455 103441618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103442795 103442882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGAAGGTGAAGATGCTGAGCCGGAATCCGGACAATTATGTCCGCGAAACCAAGTTGGACTTACAGAGAG
TTCCAAGAAACTATGATCCTGCTTTACATCCTTTTGAGGTCCCACGAGAATATATAAGAGCTTTAAATGC
TACCAAACTGGAACGAGTATTTGCAAAACCATTCCTTGCTTCGCTGGATGGTCACCGTGATGGAGTCAAT
TGCTTGGCAAAGCATCCAGAGAAGCTGGCTACTGTCCTTTCTGGGGCGTGTGATGGAGAGGTTAGAATTT
GGAATCTAACTCAGCGGAATTGTATCCGTACAATACAAGCACATGAAGGCTTTGTACGAGGAATATGTAC
TCGCTTTTGTGGGACTTCTTTTTTCACTGTTGGTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGG
CCAGGCTATGGAGACGAGGAAGAGCCATTACATACAATATTAGGAAAGACAGTGTATACTGGGATTGATC
ATCACTGGAAAGAAGCTGTTTTTGCCACATGTGGACAGCAAGTAGACATTTGGGATGAACAAAGAACTAA
TCCTATATGTTCAATGACCTGGGGATTTGACAGTATAAGTAGTGTTAAATTTAACCCAATTGAGACATTT
CTCTTGGGAAGTTGTGCATCTGACAGGAATATAGTACTGTACGATATGAGGCAAGCTACTCCTTTGAAAA
AGGTTATCTTAGATATGAGAACAAATACAATCTGTTGGAACCCTATGGAAGCTTTCATTTTTACAGCAGC
AAATGAAGATTATAACTTATATACTTTTGATATGCGTGCACTGGACACTCCTGTAATGGTCCATATGGAT
CATGTATCTGCAGTGCTTGATGTGGATTACTCTCCCACTGGGAAGGAGTTTGTGTCTGCTAGTTTCGATA
AATCTATTCGAATCTTTCCTGTAGACAAAAGTCGAAGCAGGGAGGTATATCATACAAAGAGAATGCAACA
TGTTATCTGTGTAAAATGGACTTCTGACAGCAAGTATATTATGTGTGGATCTGATGAAATGAACATTCGC
CTGTGGAAAGCTAATGCTTCTGAAAAATTGGGTGTGCTTACATCACGAGAAAAAGCAGCCAAGGATTATA
ACCAGAAATTGAAGGAGAAATTTCAGCATTATCCTCATATAAAACGTATAGCTCGTCATCGACATCTACC
AAAATCTATCTATAGCCAGATTCAGGAACAGCGCATCATGAAAGAAGCTCGTCGACGAAAGGAAGTGAAT
CGTATTAAACACAGCAAGCCTGGATCTGTGCCACTTGTGTCAGAGAAGAAGAAACACGTAGTGGCAGTTG
TAAAATAA

Translation (445 aa):
MKVKMLSRNPDNYVRETKLDLQRVPRNYDPALHPFEVPREYIRALNATKLERVFAKPFLASLDGHRDGVN
CLAKHPEKLATVLSGACDGEVRIWNLTQRNCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDG
PGYGDEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETF
LLGSCASDRNIVLYDMRQATPLKKVILDMRTNTICWNPMEAFIFTAANEDYNLYTFDMRALDTPVMVHMD
HVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDEMNIR
LWKANASEKLGVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVN
RIKHSKPGSVPLVSEKKKHVVAVVK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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